PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01639g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 351aa    MW: 40487.2 Da    PI: 4.7378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01639g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.4e-36461382103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye+++d+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F
  Niben101Scf01639g04001.1  46 FLTKTYEMVDDSSTDHVVSWNRGGQSFVVWDPQAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKIDPEK---------WEFANEAF 121
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+++ll++i+r+k++
  Niben101Scf01639g04001.1 122 LKGNEQLLRNIRRRKTT 138
                               **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-204669IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-2097109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMNPLYSVKE EYPGSSSGGG GGEPPPPVMT PPQPMEGLHD IGPPPFLTKT YEMVDDSSTD  60
HVVSWNRGGQ SFVVWDPQAF STSLLPRFFK HNNFSSFVRQ LNTYGFRKID PEKWEFANEA  120
FLKGNEQLLR NIRRRKTTNS QLLPTEQALG PCVELGRFGF DGEVDRLRHD KQVLMMELVK  180
LRQQQQNTRS YLRSLEVRLQ GTERKQQQMM NFLARAMQNP EFVQQLIRQK EKRKELEEAI  240
TKKRRRPIDQ GPSTLDVGGS NRPIKSEPLE FGEGSEFQVS ELEALALEMQ GFGRSRRYQH  300
EEETKEGLEQ FGNTDRELDE GFWEELFNDE DVSGNEDGEE EDVNVLAESW F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-254414018125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009631619.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
RefseqXP_016443433.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3XU120.0A0A1S3XU12_TOBAC; heat stress transcription factor A-7a-like isoform X2
STRINGXP_009631618.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B