PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01625g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 387aa    MW: 43654.6 Da    PI: 8.0963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01625g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-07326378346
                               SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                W  eE+e l ++vkq+ +       W++I +       ++Rt+ ++k++w +
  Niben101Scf01625g02005.1 326 LWRHEEEEMLEEGVKQFSTTvnkniPWRKILELGRhvfdQTRTPTDLKDKWKQ 378
                               69*****************************9999****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.09E-9562IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.4E-9556IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002492.6E-5853IPR001965Zinc finger, PHD-type
PROSITE patternPS013590952IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500906.922319380IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.3E-7321382IPR009057Homeodomain-like
SuperFamilySSF466894.99E-7322381IPR009057Homeodomain-like
SMARTSM007173.9E-5323382IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGPSEKEICI KCEKGGEVLA CADIYCPIAV HVRCMGCPAR FDDLGKFYCP YCLYRKSVAK  60
FNQAKEHVLS KKQALHAFID KEMIDNVRQV PSIVSKSTCE RAVEPLPENK SEVPQSNCDQ  120
QRVVGQQIHS GAVVACGSEP SDHTSSKATA TDFRVLETGN RVQVNDLQEV GEHQREKSVQ  180
DHHQDNHLSN SCVAEEEKME NELVLKETKR NSVEIAGEQM IGVDQTAATF LNADPSPLQH  240
LKGKRRVETG DSTCRESKPV STQRKPGKLV NKVRDEHMVT DSPRRLTRTS ASLLENSNLA  300
GQLVQVKQPS MLLPVELPYG KRKRVLWRHE EEEMLEEGVK QFSTTVNKNI PWRKILELGR  360
HVFDQTRTPT DLKDKWKQIC SKYGGRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801590.10.0PREDICTED: uncharacterized protein LOC104247318 isoform X1
RefseqXP_009801591.10.0PREDICTED: uncharacterized protein LOC104247318 isoform X1
RefseqXP_016471527.10.0PREDICTED: uncharacterized protein LOC107793649 isoform X1
RefseqXP_016471528.10.0PREDICTED: uncharacterized protein LOC107793649 isoform X1
TrEMBLA0A1S4A4G30.0A0A1S4A4G3_TOBAC; uncharacterized protein LOC107793649 isoform X1
TrEMBLA0A1U7YI260.0A0A1U7YI26_NICSY; uncharacterized protein LOC104247318 isoform X1
STRINGXP_009801590.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862910