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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01623g09005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 110aa MW: 12087.2 Da PI: 10.2979 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.1 | 2.9e-19 | 17 | 51 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR+gp g+k+LCnaCG++y kk++ Niben101Scf01623g09005.1 17 CSDCHTTRTPLWRSGPAGPKSLCNACGIKYNKKRR 51 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.413 | 11 | 46 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.9E-13 | 11 | 70 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-13 | 12 | 51 | No hit | No description |
CDD | cd00202 | 7.82E-13 | 16 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.0E-16 | 16 | 51 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.7E-17 | 17 | 51 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 17 | 42 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MDLKEVKGSE VEKMKTCSDC HTTRTPLWRS GPAGPKSLCN ACGIKYNKKR RQLLGLDEGR 60 SDKGNKKRKI SGEKNGQSLK MKLMALGGKL REEEQAAILL MALSCGSVYA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 68 | KRRQLLGLDEGRSDKGNKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019263042.1 | 2e-72 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 2e-28 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | A0A1J6J5I5 | 5e-71 | A0A1J6J5I5_NICAT; Gata transcription factor 16 | ||||
STRING | XP_009758127.1 | 9e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-25 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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