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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01555g04002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 332aa MW: 36739.7 Da PI: 9.4962 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.5 | 8.4e-20 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell +v+++G+++W++I++ ++ gR++k+c++rw + Niben101Scf01555g04002.1 14 KGPWSPEEDELLQTLVEKHGPRNWSLISKSVP-GRSGKSCRLRWCNQ 59 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.4e-18 | 68 | 110 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Niben101Scf01555g04002.1 68 TFTPEEDETIIRAHAKFGNK-WATIARLLS-GRTDNAIKNHWNST 110 69******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.276 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.94E-32 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-18 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-19 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-26 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.85E-17 | 16 | 58 | No hit | No description |
SMART | SM00717 | 2.7E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.78 | 66 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-12 | 68 | 111 | No hit | No description |
Pfam | PF00249 | 4.9E-15 | 68 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MAAITQRKDS DRIKGPWSPE EDELLQTLVE KHGPRNWSLI SKSVPGRSGK SCRLRWCNQL 60 SPQVEHRTFT PEEDETIIRA HAKFGNKWAT IARLLSGRTD NAIKNHWNST LKRKCCSMSE 120 DLSFETPQQP LKRSSSVGPS TNFSSHMNPG SPSGSDLSDS SLSGFPHPLV YRPVPRTGGI 180 FPLPPSVQQI ETAPFIPDPP TSLCLSLSGS GTRETLNQTA QQTQQTQPPQ SPPLPPPPPL 240 TLPPVDKPVP PPTAAFMAQV PQTKQSYDFC AAALPKSGEK QFFSPEFLRV LQDMIRKEVR 300 NYMSGVEHNG IYMQTDAIRN AVVKRIGISK IE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 7e-40 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-40 | 13 | 114 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019237070.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | A0A1J6K014 | 0.0 | A0A1J6K014_NICAT; Transcription factor myb44 | ||||
STRING | XP_009795719.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 8e-72 | myb domain protein 73 |