PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01526g10006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 441aa    MW: 49056.2 Da    PI: 6.7602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01526g10006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.52.3e-26219272155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k +++Wt+eLH++Fve+veqL G+++A+P++ilelmkv+gLt ++v+SHLQk+Rl
  Niben101Scf01526g10006.1 219 KMKVDWTTELHKKFVEVVEQL-GIDQAIPSRILELMKVEGLTTHNVASHLQKFRL 272
                               5689*****************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011012.05130IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.1E-4252No hitNo description
PROSITE profilePS5129412.729216275IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-25217273IPR009057Homeodomain-like
SuperFamilySSF466892.15E-16217272IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-23219273IPR006447Myb domain, plants
PfamPF002493.1E-6222270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MMKCIALGAV EFLQKPLSDD KLRNIWQHVV HKAFNSGGKN VSESLKPVKE SLLSMLELQP  60
VKSEVKSEAD NENSNGAEPL TSVVENQKEL PPYCDKYPAP STPQQKQGVR SVDDGDFQDH  120
TILSTEQDSG VNEGDTKSVE TTCCDSVAET NALADSPGRL EEAITKDEHD FAADQKMEDH  180
VATCSQNNDC LGNSSTRSAD TSKASGLHRS SGTIANKKKM KVDWTTELHK KFVEVVEQLG  240
IDQAIPSRIL ELMKVEGLTT HNVASHLQKF RLQPIQILPK EDEKRWPHPQ PRDSVQRSYY  300
PHKPVLAFPT YHSNHAPASG QFYPARVPPG NYPNGAHMWG LPYYPGWRPS ETWHWTPHPG  360
NASGLHRAVG IQNRYSILEK SLDLQPAEEV IDKVVKEAIN KPWLLLPLGL KPPSTESVLD  420
VLSKQGISTI PSRINNSLRP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-15224272654Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254856.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254857.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254858.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254859.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254860.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254862.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
RefseqXP_019254863.10.0PREDICTED: two-component response regulator-like APRR2 isoform X2
TrEMBLA0A1J6I0Z70.0A0A1J6I0Z7_NICAT; Two-component response regulator-like aprr2
STRINGXP_009771721.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56731531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.62e-79ARR-B family protein