PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01518g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 390aa    MW: 44679.2 Da    PI: 5.7386
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01518g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.61.4e-091760340
                  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                              +r C+ + +k+++++C  ++ +lC++C ++ H+       H++v
  Niben101Scf01518g02002.1 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60
                              578*****************************657777788766 PP
2CCT712.9e-24335378144
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                               Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Niben101Scf01518g02002.1 335 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKST 378
                               9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9071562IPR000315B-box-type zinc finger
SMARTSM003361.8E-101562IPR000315B-box-type zinc finger
PfamPF006437.0E-81760IPR000315B-box-type zinc finger
CDDcd000211.02E-81860No hitNo description
PROSITE profilePS5101716.033335377IPR010402CCT domain
PfamPF062037.8E-19335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MMSSEKKMAN VVGAKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV  60
GLKTSSLKSS DEFPCSENSS SVPSWHRGFT RKARTPRNGK NSRNVKNPIQ LVVPEIFSDE  120
NSQEENEEQL LCRVPTIDPF VTDEYSKDQM KNDFSDDHMN RFHGRLNIPS EMELAEFAAD  180
VESLLGKGLD DEESFNCMEL GLRFLEKHDD SMDCSLVDEK IKVEINEGEV EVVMDSTNYN  240
QVDYSDTFDL KFYCDSPVIT LEEDDRKNNK ILLNLDYGGV LNAWADQRSP WTTGERPEVD  300
FNDCWPVCMG NCGNIHPYGD MGTMAGHVAI VDEGREARVL RYKEKRRTRL FSKKIRYEVR  360
KLNAEKRPRM KGRFVKSTNF APTPFLLLNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345361RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602362.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD03e-96COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A1S3YPL30.0A0A1S3YPL3_TOBAC; zinc finger protein CONSTANS-LIKE 16-like
STRINGXP_009602362.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-92B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]