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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01507g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 304aa MW: 34198.8 Da PI: 6.3984 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106 | 1.9e-33 | 168 | 225 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp+vv++tYeg+Hnh+ Niben101Scf01507g00004.1 168 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSVVITTYEGQHNHH 225 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-35 | 152 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 159 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.984 | 162 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-39 | 167 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 168 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MSDNNPFYHD YMGTGGINNA FSNFFGDQNP SIYDQIPTNT QTPHQDFDPS SYMSTLTECL 60 HGSTDYNSLS DVLCSSSEVV YPPLDQESSK RNSTEIPLTP NSLVSSSSSE AGGEEDSSKS 120 KKDLQAKDQC EDVDDKSKKV SKAKKKGEKK QKEPRFAFMT KSEIDNLEDG YRWRKYGQKA 180 VKNSPFPRSY YRCTSQKCSV KKRVERSYED PSVVITTYEG QHNHHCPATL RGNAAAAMLS 240 PSFLPSSQLI PQDVLFSQML TTPANQNQLP INYSVYNYQQ QPQLGPEYGL FQDMVASLIH 300 KREP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-28 | 157 | 228 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-28 | 157 | 228 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776873.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Refseq | XP_016455219.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1S3YSL8 | 0.0 | A0A1S3YSL8_TOBAC; probable WRKY transcription factor 71 | ||||
TrEMBL | A0A1U7WDY3 | 0.0 | A0A1U7WDY3_NICSY; probable WRKY transcription factor 71 | ||||
STRING | XP_009776873.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-52 | WRKY DNA-binding protein 71 |