PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01507g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 304aa MW: 34198.8 Da PI: 6.3984

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01507g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	168	225	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp+vv++tYeg+Hnh+ Niben101Scf01507g00004.1 168 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSVVITTYEGQHNHH 225 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.5E-35	152	227	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-29	159	227	IPR003657	WRKY domain
PROSITE profile	PS50811	31.984	162	227	IPR003657	WRKY domain
SMART	SM00774	4.6E-39	167	226	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	168	225	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MSDNNPFYHD YMGTGGINNA FSNFFGDQNP SIYDQIPTNT QTPHQDFDPS SYMSTLTECL 60 HGSTDYNSLS DVLCSSSEVV YPPLDQESSK RNSTEIPLTP NSLVSSSSSE AGGEEDSSKS 120 KKDLQAKDQC EDVDDKSKKV SKAKKKGEKK QKEPRFAFMT KSEIDNLEDG YRWRKYGQKA 180 VKNSPFPRSY YRCTSQKCSV KKRVERSYED PSVVITTYEG QHNHHCPATL RGNAAAAMLS 240 PSFLPSSQLI PQDVLFSQML TTPANQNQLP INYSVYNYQQ QPQLGPEYGL FQDMVASLIH 300 KREP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	157	228	7	78	Probable WRKY transcription factor 4
2lex_A	1e-28	157	228	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776873.1	0.0	PREDICTED: probable WRKY transcription factor 71
Refseq	XP_016455219.1	0.0	PREDICTED: probable WRKY transcription factor 71
TrEMBL	A0A1S3YSL8	0.0	A0A1S3YSL8_TOBAC; probable WRKY transcription factor 71
TrEMBL	A0A1U7WDY3	0.0	A0A1U7WDY3_NICSY; probable WRKY transcription factor 71
STRING	XP_009776873.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	2e-52	WRKY DNA-binding protein 71