PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01498g04003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 298aa    MW: 33928.2 Da    PI: 5.64
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01498g04003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.87.8e-18101493128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLp.k...kvkaeekew..yfFskrdkkyatgkrknr.at 78 
                                GfrF+Ptd+e +  +L + v++k+++ + +  ++vd+y k ePw++  +   + + ++++   yf +k +kk  +  r +r + 
  Niben101Scf01498g04003.1  10 EGFRFRPTDSEGL-MFLLRFVARKEMHDSGFiTTNVDVYgKQEPWEIYdNgvpCGDDDNNSSyrYFITKLKKK--SYARYHRsVG 91 
                               6**********99.6888888888877767735677*99456*****74455432333334422444444443..4567777578 PP

                       NAM  79 ksgyWkatgkdkevlsk......kgel..vglkktLvfykg..rapkgektdWvmheyrl 128
                               ++g+Wk+  k k+v+ k      +  +  +g k +L + ++    ++ +  +W+m+ey+l
  Niben101Scf01498g04003.1  92 NKGTWKQDNKGKPVHYKnmgnssS--VvnIGSKMSLSYKNKrfYPEDQKDGHWLMKEYKL 149
                               8**************996655433..1569********96622355666789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.0638172IPR003441NAC domain
SuperFamilySSF1019411.44E-1510170IPR003441NAC domain
PfamPF023654.5E-1210149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEQLQPLGQE GFRFRPTDSE GLMFLLRFVA RKEMHDSGFI TTNVDVYGKQ EPWEIYDNGV  60
PCGDDDNNSS YRYFITKLKK KSYARYHRSV GNKGTWKQDN KGKPVHYKNM GNSSSVVNIG  120
SKMSLSYKNK RFYPEDQKDG HWLMKEYKLS NVILHMFDEE RRDFVLCAIK KLKHVNSSSK  180
TSTITTLNNI LDGALEVDVA VDIFEPLTAA TEPTEAAYNC GKHSVEATAR YDPSIPDMSI  240
NSAHIEYSKM ANMSQMNLIS FDQSVPEDVL GLDPWDIMCS DELNRMFEAV SESCPDGC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774958.11e-166PREDICTED: protein ATAF2-like
TrEMBLA0A1U7W8K21e-164A0A1U7W8K2_NICSY; protein ATAF2-like
STRINGXP_009774958.11e-165(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-09NAC domain containing protein 47