PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 152aa MW: 16658.2 Da PI: 4.7279

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01478g07015.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37	7.7e-12	11	53	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d+ + +a + ++ + +W++Ia+ ++ g+tlk++k+++ Niben101Scf01478g07015.1 11 WSREQDKAFENALATYPEDspdRWEKIASDVP-GKTLKEVKHHY 53 ******************************.********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	1.4E-9	7	59	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.05E-12	9	65	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-7	10	58	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.259	11	57	IPR017877	Myb-like domain
CDD	cd00167	1.02E-9	11	53	No hit	No description
Pfam	PF00249	3.3E-9	11	53	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MTIDESSSSI WSREQDKAFE NALATYPEDS PDRWEKIASD VPGKTLKEVK HHYDLLIDDV 60 SRIESGCVPL PCYNSSSDSS TSHGADEGIG KKSGNSNGES NHGGKSTRAD QERRKGIAWT 120 EDEHSVYLSM QMLLTSSLAS LSEGPHCFCF GI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-21	1	76	1	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016467761.1	8e-82	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q9FNN6	8e-47	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1S3ZTM2	2e-80	A0A1S3ZTM2_TOBAC; transcription factor DIVARICATA-like
STRING	XP_009770756.1	4e-81	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4149	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	3e-40	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]