PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01462g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 402aa MW: 44469.6 Da PI: 6.8676 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 1.9e-28 | 136 | 190 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ilelm+v+gLt+++++SHLQkYR + Niben101Scf01462g01010.1 136 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGVDGLTRHNIASHLQKYRAH 190 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.915 | 133 | 192 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-28 | 134 | 192 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.99E-19 | 135 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-26 | 136 | 190 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 139 | 188 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MLTVSPLSYK TTKNDRDNHM DSFTIRGVDD LPDFDDGNLL ESIDFDDIFL GINVNDEMLP 60 DMEMDSEILA EFSVSSGDES DHLNSYNTTT PPLHVEEHNS STKEEVEKAV SDLNQKSEKS 120 KPKSKEKPKN PEGKRKVKVD WTPELHRRFV QAVEQLGVDK AVPSRILELM GVDGLTRHNI 180 ASHLQKYRAH RKHLLAREAE AASWSQRKQM YGGAAMVGGG GKRDINPWPP TATMGFPPMT 240 TPPMVPSHFR PLHVWGHPPA DQSMMHMWPK HITHLPPAWA PVVPPHSSPP IDPSFWHSHH 300 QRVLNSLAPG TPCIPSPIAP TRFPVQGIPP TAMVKAAPTG ARQDLPKPPS DFHPSKESID 360 AAIGDVLAKP CLPPPPLGLK PPSIDSVLNE LQRQGINKIP PT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-16 | 133 | 189 | 2 | 58 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019243360.1 | 0.0 | PREDICTED: transcription activator GLK2-like | ||||
Swissprot | Q9SIV3 | 6e-80 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1J6IIC6 | 0.0 | A0A1J6IIC6_NICAT; Transcription activator glk1 | ||||
STRING | XP_009761842.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2532 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-71 | GBF's pro-rich region-interacting factor 1 |