PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01454g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 293aa    MW: 32763.6 Da    PI: 8.4995
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01454g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like666.5e-21119164255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               pr+rWt++LH++Fv+av+ LGG+e        +lm+vk+Ltl+hvkSHLQ+YR+
  Niben101Scf01454g03005.1 119 PRMRWTSTLHAHFVHAVQLLGGHE--------QLMNVKDLTLAHVKSHLQMYRT 164
                               9**********************9........8********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-11116165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-19117165IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-15119164IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRDTISSSMP DLSLQISLPS IISKCDNHSF STESGSSGGS DLSHENNGTF RPQKAINNLP  60
LLTSFEPTLS LGFGQLPNRN LQHYHQHQHH QQYQPQIYGR DFKRSSRMIS GVKRSVRAPR  120
MRWTSTLHAH FVHAVQLLGG HEQLMNVKDL TLAHVKSHLQ MYRTVKSTDK TTAKGMTEIF  180
VNPNRGNNIG EYEKSCEEID AMTDPSVSLS NSISHNAHIR VPSSFMPETN AWSPSNREIA  240
FPYPHTYSNM DGNVPADNSF SSDTLVNLEF TLGRPSLNMG HARSSNDSTL LKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245034.11e-179PREDICTED: probable transcription factor KAN4 isoform X2
TrEMBLA0A1S3YGM71e-168A0A1S3YGM7_TOBAC; probable transcription factor KAN4
TrEMBLA0A1U7YZK01e-168A0A1U7YZK0_NICSY; probable transcription factor KAN4 isoform X2
STRINGXP_009804553.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122621822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-52G2-like family protein