PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01438g04007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 519aa    MW: 56562.2 Da    PI: 6.7822
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01438g04007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-11142198155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Niben101Scf01438g04007.1 142 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 198
                               57*******************5444.2455536655.779999**************98 PP
2AP247.25.4e-15241292155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Niben101Scf01438g04007.1 241 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 292
                               57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.48E-19142208No hitNo description
PfamPF008473.7E-9142198IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-15142207IPR016177DNA-binding domain
PROSITE profilePS5103217.477143206IPR001471AP2/ERF domain
SMARTSM003802.5E-23143212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-12143207IPR001471AP2/ERF domain
PRINTSPR003676.9E-6144155IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-17241301IPR016177DNA-binding domain
CDDcd000184.96E-25241301No hitNo description
PfamPF008476.7E-10241292IPR001471AP2/ERF domain
PROSITE profilePS5103219.045242300IPR001471AP2/ERF domain
SMARTSM003801.3E-32242306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-18242300IPR001471AP2/ERF domain
PRINTSPR003676.9E-6282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDMDSSSENW LGFSLSNINS NSNNNSSINL PSNNASELCL FQAFNSYPNS GVEENGKGPP  60
KLEDFLGGSS SITAAATEVC WENPATTTTT SLCEYGSELK TIATSFLRSF STDQNNSQNK  120
QLAVVALPPA KKAVETFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD  180
KEEKAARAYD LAALKYWGPT TTTNFPVLNY EKELEEMKSM TRQEFVASLR RKSSGFSRGA  240
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  300
IYRYDVKSIA SSNLPVGGMN NKAKPSPESA ASESTKNVEG NRSQDHISSA TSDPLISSQA  360
PNMVNVGFGL PIKQDASGFC SILGYINDQN NGSKNPSANA TFCHGPPGGM TIQAQCTTIS  420
STDLSAATTS LNEVNNNQVI FSEEGYYHQQ QQEQQSGSCN TITSVPSDIS MALNSNASTT  480
TTTLDGSNFG NWMPPSLHSF ETTAKNKLAP FQTPIFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770282.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-139AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U7VQU80.0A0A1U7VQU8_NICSY; AP2-like ethylene-responsive transcription factor AIL5 isoform X2
STRINGXP_009770281.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-127AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]