PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01433g05003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 386aa    MW: 42231.9 Da    PI: 6.0901
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01433g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18307341135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Niben101Scf01433g05003.1 307 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 341
                               *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.0E-18301355IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.846301337IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.76E-14302364No hitNo description
Gene3DG3DSA:3.30.50.107.2E-15305339IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.21E-14306354No hitNo description
PROSITE patternPS003440307332IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16307341IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLYRTQHHSF FSPFNPFTFS SSLSPHPLPP PSSSSPSPLS HLPSDQGMDC VEGALKSSFM  60
SEAALKTTHQ QAYGDDLWAN GNCQNVVSSD DFFVDDLLDF SNGFVEDQGE EEKGEDNAVH  120
KICSVSVSVS PQKQLEDKEA EKENDPVSPP AKEDFDSLPG SELILPADDL DSLEWLSHFV  180
EDSFSEYSLT YPAGKLPVKP VVNQSEDCEI TVQEKSCFIT PVQTKARTKR GRANVRVWAA  240
GSGSLTESSS SSSSSSSTTT MSSSPSNWVL YQIPVHTAES PGKPLAKKPK RKPAVQGGNG  300
HQQPRRCSHC GVQKTPQWRA GPMGAKTLCN ACGVRFKSGR LLPEYRPACS PTFSSELHSN  360
NHRKVLEMRQ KKEFEESGSA QPVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761911.10.0PREDICTED: GATA transcription factor 5
RefseqXP_016446822.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH572e-75GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S3Y4M40.0A0A1S3Y4M4_TOBAC; GATA transcription factor
TrEMBLA0A1U7VAA20.0A0A1U7VAA2_NICSY; GATA transcription factor
STRINGXP_009761911.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-70GATA transcription factor 5