PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01429g01013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 292aa MW: 32844 Da PI: 10.0414

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01429g01013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	80	4.3e-25	130	184	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR+ R k e e+k k rkp+lh SRh hA+rRpRg gGrF Niben101Scf01429g01013.1 130 GPIFVNAKQYHGILRRRKFRVK-EMENKF-LKPRKPFLHLSRHLHAMRRPRGGGGRF 184 69****************98.556888.8***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.2E-28	127	187	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	29.563	128	187	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-19	131	153	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-21	131	184	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.3E-19	161	184	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MHSIFTKRNE TATLWGSLVP HSVEPFGHMK SASMEKPSKG DITDFTTSSE SQSGDPKSSQ 60 KAEKLSDGVS MKSSNIDCQG HFEPLIYAKY PYGEKCFSTY GSQVSYNRVS ILKNFKGRVM 120 LPLNLTSDEG PIFVNAKQYH GILRRRKFRV KEMENKFLKP RKPFLHLSRH LHAMRRPRGG 180 GGRFLNTRKV NGSTNDGTTK TCNRKSEPNG SQNSEVLQSD HIGNFNSPNE TTSRMSCNSS 240 EVTSFYSREN LDTYTVHNPK PSIQAFFDMM NTVMPSKWGS AAADSCCNLN IW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	6e-15	129	185	2	60	HAPB protein
4g92_A	6e-15	129	185	2	60	HAPB protein
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019254537.1	1e-166	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_019254538.1	1e-166	PREDICTED: nuclear transcription factor Y subunit A-10-like
Refseq	XP_019254539.1	1e-166	PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBL	A0A1J6I009	1e-165	A0A1J6I009_NICAT; Nuclear transcription factor y subunit a-2
STRING	XP_009770986.1	1e-134	(Nicotiana sylvestris)
STRING	XP_009613978.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-40	nuclear factor Y, subunit A10