![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf01426g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 159aa MW: 18018.9 Da PI: 9.7848 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 54.4 | 2.8e-17 | 2 | 38 | 3 | 40 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkg 40 +++WtpeLH++Fv+aveqL G+++AtP++ilelmkv+g Niben101Scf01426g00007.1 2 KVDWTPELHKKFVKAVEQL-GIDQATPSRILELMKVEG 38 789****************.****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-14 | 2 | 38 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-13 | 2 | 38 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-5 | 3 | 35 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.99E-8 | 3 | 38 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MKVDWTPELH KKFVKAVEQL GIDQATPSRI LELMKVEGCN GGKFCQRKMR KDGFVLNLEI 60 QYRGAIIHIT LPWPSQHINR IMHLLLVNSI PPGYHKVAYP NGAHMWGSPY YPGWQLSQTW 120 HWKPHPGLYA GVWGCTVVPS SSGSCPPYPQ GTSTKDTRL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595585.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_009595586.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_009595587.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_009595588.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_009595589.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_018624868.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
Refseq | XP_018624869.1 | 3e-45 | PREDICTED: two-component response regulator-like APRR2 | ||||
TrEMBL | A0A1S3X7R1 | 1e-43 | A0A1S3X7R1_TOBAC; two-component response regulator-like APRR2 | ||||
STRING | XP_009595585.1 | 1e-44 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5673 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18020.5 | 3e-17 | ARR-B family protein |