PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01418g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | G2-like | ||||||||
Protein Properties | Length: 248aa MW: 27657.9 Da PI: 8.7244 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 55.9 | 9.5e-18 | 26 | 60 | 1 | 35 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilel 35 kprlrWt +LH++Fv+av++LGG+ekAtPk++l+l Niben101Scf01418g00012.1 26 KPRLRWTVDLHQHFVDAVTKLGGPEKATPKSVLRL 60 79******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-15 | 23 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-12 | 26 | 65 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.7E-5 | 26 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 2.0E-9 | 112 | 137 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MYNGSGVGRG GGFMYENEVV MTRDPKPRLR WTVDLHQHFV DAVTKLGGPE KATPKSVLRL 60 GQQAKRQNIA EQNKENSSGD SSGQFNLHSS GPSTSSLSMN YIQRDVPIAE AVQQKLQMRI 120 EAQGKYLQAI LSKAQKSIPV NMNSPSAVEA TRAQLTDFDL PLSNLMNYTN RQNRDDYIIG 180 KTTHDDNMKE ELQRSSYIVE EEQKSNMNLK LKEASINFDL NSRSSYDFVG ANAAVLEAKS 240 LSHGRLDT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769429.1 | 1e-157 | PREDICTED: myb family transcription factor APL isoform X2 | ||||
Refseq | XP_016486019.1 | 1e-157 | PREDICTED: myb family transcription factor APL-like isoform X2 | ||||
TrEMBL | A0A1S4BAV0 | 1e-156 | A0A1S4BAV0_TOBAC; myb family transcription factor APL-like isoform X2 | ||||
TrEMBL | A0A1U7W471 | 1e-156 | A0A1U7W471_NICSY; myb family transcription factor APL isoform X2 | ||||
STRING | XP_009769428.1 | 1e-153 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4416 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 6e-46 | G2-like family protein |