PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01406g03020.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 364aa    MW: 39635.8 Da    PI: 5.074
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01406g03020.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-175196147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              +g+W++eEd +l ++v  +G ++W++Iar ++ gR++k+c++rw + 
  Niben101Scf01406g03020.1 51 KGPWSPEEDAILSRLVSNFGARNWSLIARGIP-GRSGKSCRLRWCNQ 96
                              79******************************.***********985 PP
2Myb_DNA-binding55.81e-17103147147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               r++++ eEd ++++a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Niben101Scf01406g03020.1 103 RKPFSDEEDRIILQAHAVHGNK-WASIARLLP-GRTDNAIKNHWNST 147
                               789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.3324697IPR017930Myb domain
SuperFamilySSF466892.05E-3048144IPR009057Homeodomain-like
SMARTSM007177.1E-155099IPR001005SANT/Myb domain
PfamPF002499.0E-175196IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2652104IPR009057Homeodomain-like
CDDcd001674.96E-145395No hitNo description
PROSITE profilePS5129427.32198152IPR017930Myb domain
SMARTSM007175.1E-17102150IPR001005SANT/Myb domain
PfamPF002492.0E-15103147IPR001005SANT/Myb domain
CDDcd001678.72E-13105148No hitNo description
Gene3DG3DSA:1.10.10.608.4E-24105151IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MENNILENLE GYYGGGSGDA GGSVGGDDEE ALVLEDGSGS SDRKKTADRV KGPWSPEEDA  60
ILSRLVSNFG ARNWSLIARG IPGRSGKSCR LRWCNQLDPA VKRKPFSDEE DRIILQAHAV  120
HGNKWASIAR LLPGRTDNAI KNHWNSTLRR RCSELGKLRS DSSNVLEDVS AEKSKASSEE  180
TQSCGDVNSL KAIEGKDVSS QENQEDNYYE DKTHEEVQRS DVANDPPILF RPVARISAFS  240
VYGSLNAPET LVQTPRLTPI QVPDFGVSKL LEGAFTDRLV PHQCGHGCCG NASQENNRSS  300
LLGPEFVDYT EAPSFSSHEL ATLATEISNV AWCKSGLENS SIEVIFNPAT RGTCGTSHLP  360
SRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-41481514107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783755.10.0PREDICTED: myb-related protein B-like
RefseqXP_016483070.10.0PREDICTED: myb-related protein B-like
SwissprotQ425751e-95MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A1S4B2A40.0A0A1S4B2A4_TOBAC; myb-related protein B-like
TrEMBLA0A1U7XBC20.0A0A1U7XBC2_NICSY; myb-related protein B-like
STRINGXP_009783755.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.18e-95myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]