PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf01396g05005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 243aa MW: 27801.4 Da PI: 4.8204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01396g05005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.2e-12	50	90	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rrRR+++ +++ Lrel+P + K++ a+iLe A++YI+ Lq Niben101Scf01396g05005.1 50 RRRRKQVDKRIKALRELIPGC-----DKVDQASILEDAIKYIQALQ 90 9*****************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.824	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-10	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-13	48	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	50	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-14	50	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.52E-7	54	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFNKENDIE KQQDEGREDE LNLSTENGNN TDEMHSLHNV RESNSRNTTR RRRKQVDKRI 60 KALRELIPGC DKVDQASILE DAIKYIQALQ QLHQITAMRM GLMSQEAYMS QAGMRQMPQM 120 EPTNGIMANQ TVIPPFALPT SDSLSGLQMV PQFQAPFCPQ FLQSTPYTMP LLPSFFTTPS 180 PTMTQGRTIR DSSASNPRFE LLREYEEAID YNNSSQGLFF SFPMLQINYD IIILTLPFSS 240 SMN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009758958.1	1e-150	PREDICTED: transcription factor PIF1-like isoform X2
Refseq	XP_016469228.1	1e-150	PREDICTED: transcription factor PIF1-like isoform X1
TrEMBL	A0A1S3ZY04	1e-149	A0A1S3ZY04_TOBAC; transcription factor PIF1-like isoform X1
TrEMBL	A0A1U7UXR2	1e-149	A0A1U7UXR2_NICSY; transcription factor PIF1-like isoform X2
STRING	XP_009758957.1	1e-148	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA19915	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	5e-13	phytochrome interacting factor 3