PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01374g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92712.2 Da    PI: 6.4663
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01374g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-191775357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Niben101Scf01374g07001.1 17 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                              5679*****************************************************97 PP
2START172.62.6e-541613692205
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEEC CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevis 86 
                               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d + W ++++++++l+v+ 
  Niben101Scf01374g07001.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEILKDCPSWFRDCRAVDVLNVLP 244
                               789*******************************************************.9999999999**************** PP

                               TT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEE CS
                     START  87 sg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvt 165
                               ++  g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s ++
  Niben101Scf01374g07001.1 245 TAngGTIELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIH 329
                               9999************************************************99988899************************* PP

                               EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               +v+h++l++++++++lr+l++s+++ ++kt+va+l+++++
  Niben101Scf01374g07001.1 330 IVDHMNLESWSVPEVLRPLYESSIVLAQKTTVAALRYLRQ 369
                               ***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5161276IPR001356Homeobox domain
SMARTSM003895.2E-161480IPR001356Homeobox domain
CDDcd000868.06E-171777No hitNo description
SuperFamilySSF466898.98E-171780IPR009057Homeodomain-like
PfamPF000462.2E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-181975IPR009057Homeodomain-like
CDDcd146861.15E-669108No hitNo description
PROSITE profilePS5084825.437151379IPR002913START domain
CDDcd088755.89E-75155371No hitNo description
SuperFamilySSF559619.06E-37160372No hitNo description
Gene3DG3DSA:3.30.530.201.7E-22160365IPR023393START-like domain
SMARTSM002347.7E-42160370IPR002913START domain
PfamPF018525.2E-52161369IPR002913START domain
PfamPF086701.5E-49700842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MASCKDGKTS SVMDNGKYVR YTPEQVEALE RLYHDCPKPS SMRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRRQ  120
THSTTLATKD TSCESVVTSG QHHLTSQHPP RDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIIAISH GCTGVAARAC GLVGLEPTRV AEILKDCPSW FRDCRAVDVL  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTTVMD DGSLVVCERS LGNTQNGPSM  300
PPVQNFVRAE ILPSGYLIRP CEGGGSIIHI VDHMNLESWS VPEVLRPLYE SSIVLAQKTT  360
VAALRYLRQI AQEVSQTNVT NWGRRPAALR ALSQRLSRGF NEALNGLTDE GWSMLGSDGM  420
DDITILVNSS PDKLMGLNLS FANGFSSLSN AIMCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYSA AAIKVGPCCL PGTRVGNFGG QVILPLAHTV EHEEASLVDL LEVIKLEGVG  540
HSPEDAIMPR DMFLLQLCSG MDENAVGTSA ELIFAPIDAS FADDAPLLPS GFRIISLESG  600
KESSSRNRTL DLTSALETGP AENKVGNDLH TNGGTSRSVM TIAFQFAFES HMQENVASMA  660
RQYVRSIISS VQRVALALSP SHLGSHGGLR LPLGTPEAHT LARWICQSYR CFLGVELLKS  720
IAEGSESILK SLWHHSDAII CCSAKAMPVF TFANQAGLDM LETTLVALQD ITLEKIFDDH  780
GKKNLCTEFP QIMQQGFACL QGGICLSSMS RPISYERAVA WKAMNEEDSP HCICFMFVNW  840
SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267274.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A314KZL50.0A0A314KZL5_NICAT; Homeobox-leucine zipper protein athb-15
STRINGXP_009774805.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]