PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01374g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 767aa    MW: 85840.8 Da    PI: 6.8781
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01374g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.8e-21102157156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Niben101Scf01374g00003.1 102 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 157
                               7999************************************************9877 PP
2START217.93.3e-682795043206
                               HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS
                     START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdet 75 
                                ++a++e+ k+a+++ep+W +s     e++n+de++++f +++         + +ea+r+ g+v+m+l++lv++++d++ qW+e+
  Niben101Scf01374g00003.1 279 VNQAMEEVKKMATSGEPLWIRSFetgrEILNYDEYMKEFLTANPkddgrpnkRCIEASREMGIVFMELPRLVQTFMDVN-QWKEM 362
                               57899*****************99****************9999*******999*************************.***** PP

                               -S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS
                     START  76 la....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaell 148
                               ++    ka+t++vi++g       ga+qlm+ae q+l+p+v  R+++f+Ry++ql+ g+w+ivdvSvd  +++  ++s+v++++l
  Niben101Scf01374g00003.1 363 FPslisKAATVDVICNGegancwdGAVQLMFAEVQMLTPVVGtREVYFARYCKQLSVGQWAIVDVSVDKVEDNI-DASLVKCRKL 446
                               ************************************************************************98.9********* PP

                               SEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 149 pSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               pSg+ +++ sn h+kvtwveh +++++++h+l+r++v+sg+a+ga++w+atlq+qce+
  Niben101Scf01374g00003.1 447 PSGCFLQEQSNAHCKVTWVEHLECQKSIVHSLYRVIVNSGQAFGARRWMATLQQQCER 504
                               ********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-2386153IPR009057Homeodomain-like
SuperFamilySSF466897.94E-2191160IPR009057Homeodomain-like
PROSITE profilePS5007118.09199159IPR001356Homeobox domain
SMARTSM003893.2E-19101163IPR001356Homeobox domain
PfamPF000468.8E-19102157IPR001356Homeobox domain
CDDcd000864.89E-17106157No hitNo description
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
PROSITE profilePS5084836.34268507IPR002913START domain
SuperFamilySSF559619.2E-32270504No hitNo description
CDDcd088752.46E-104272503No hitNo description
SMARTSM002344.5E-64277504IPR002913START domain
PfamPF018524.2E-55279504IPR002913START domain
Gene3DG3DSA:3.30.530.205.2E-6389502IPR023393START-like domain
SuperFamilySSF559618.1E-11534753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MGVVDMSNNH PPSHETKDFF PSPALSLSLA GFFRDGGNVE TEEVEDGSAS RGRPREESTV  60
EISSETSGPL RSRGSDDDFE HDDITCNEDA EDPNNNSKKK KRKKYHRHTA EQIREMEALF  120
KESPHPDEKQ RQQLSKQLGL HPRQVKFWFQ NRRTQIKAIQ ERHENSLLKA EIEKLHEENK  180
GLRKTLKNPS CPNCGFTVSS NNDAPTLPAE EHQLRMENAR LRAEVEKLRA TLGKYPIGTS  240
PNNNSSSSCS GGNEDENRSA LDYNTGIFGL EKSRIMHVVN QAMEEVKKMA TSGEPLWIRS  300
FETGREILNY DEYMKEFLTA NPKDDGRPNK RCIEASREMG IVFMELPRLV QTFMDVNQWK  360
EMFPSLISKA ATVDVICNGE GANCWDGAVQ LMFAEVQMLT PVVGTREVYF ARYCKQLSVG  420
QWAIVDVSVD KVEDNIDASL VKCRKLPSGC FLQEQSNAHC KVTWVEHLEC QKSIVHSLYR  480
VIVNSGQAFG ARRWMATLQQ QCERLLFSMA TNIPTKDTTG VTTLAGRKSI LTLAQRMTWS  540
FYRMLGASSY NTWNKIPSKT GQEHTRVASR KNLTYTGEPQ GMIFCAVSSI WLPVSRNVLF  600
DFLKDETRRH EWDVMSNGGP AQSVANLAKG QDKGNAVSIH AVKLRENKMW ILQDTCTNAY  660
ESTVVYAPVD IAGMQSVITG CDSSNTAVLP SGFSILPDGI ESRGLVITSK PEDRSSEGGS  720
LLTVAFQILT SNSPTAKLSK ESVESLNNLL SSTLHKIKTS FQCDDGC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102KKKKRK
297103KKKKRKK
399103KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778213.10.0PREDICTED: homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1U7WHU10.0A0A1U7WHU1_NICSY; homeobox-leucine zipper protein GLABRA 2
STRINGXP_009778213.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62282328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]