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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01371g07014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 501aa MW: 53893.4 Da PI: 8.3102 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.7e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Niben101Scf01371g07014.1 58 FVCEICKKGFQRDQNLQLHRRGH 80 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.7 | 2.1e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Niben101Scf01371g07014.1 134 FKCERCTKKYAVQSDWKAHMKTC 156 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-4 | 57 | 80 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.26E-7 | 57 | 80 | No hit | No description |
Pfam | PF12874 | 0.0062 | 58 | 80 | No hit | No description |
SMART | SM00355 | 0.039 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.637 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 99 | 129 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 122 | 155 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.26E-7 | 129 | 155 | No hit | No description |
SMART | SM00355 | 63 | 134 | 154 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MAEMENSSSM TVVGSSLEET NTQQNFPVKK KRNLPGNPDP EAEVIALSPK TLMATNRFVC 60 EICKKGFQRD QNLQLHRRGH NLPWKLRQRT SKEVKKRVYV CPEATCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKFKCERCT KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAQEST RAQPMGITNT EENLKVDEAV TSSSSPPPQP LTPSTGVLSP VLSIQSSELP 240 ADNQNQAGVQ LQAAQGTTTH VSTTTVTATT ISTTASTTGP SSSKVFASVF PSSSTSVGQP 300 HSSYSNILCA IGPEQMSGIE PMSLSLSSSF YLSANNGSTL FQDHTGHGQH YGSTTQPALS 360 ATALLQKAAQ MGATSSNNSF LRGLGLAMSS TSTSDNISHV KLENNVEQPG LGIQLPSNVP 420 SGQWTDLMMG PSHDSMMFGN KPPTLDFLGL GNDANVTSSN GFSALLSSMD GGFGVATSSY 480 GGVATRGQPW DDHSDRKPSM L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 130 | 199 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016482648.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-133 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
Swissprot | Q9SCQ6 | 1e-134 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A1S4B1I1 | 0.0 | A0A1S4B1I1_TOBAC; protein indeterminate-domain 2-like isoform X1 | ||||
STRING | XP_009805007.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA103 | 24 | 350 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-112 | C2H2 family protein |
Publications ? help Back to Top | |||
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