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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01365g06013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 465aa MW: 53287 Da PI: 6.8786 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 298.6 | 1.6e-91 | 85 | 461 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++ Ll A+av+++++ a + L +l +++s gd++qR+aayf+ +L arl+ s y+ + +t+ +ee+ a++ f+ Niben101Scf01365g06013.1 85 LIHSLLISATAVDDNSFDSAVEDLHELYQNVSILGDSVQRVAAYFADGLIARLLTRNSPFYDMIMKLPTQ----EEEFLAFTEFY 165 57999999***********************************************9*****999888886....78889999*** PP GRAS 86 evsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163 +vsP+++f+h+t NqaIle +e+e +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg g+ +el+et+ Niben101Scf01365g06013.1 166 KVSPFYQFAHFTSNQAILETFEKEektnnGLLHVIDFDISYGFQWPSLIQSLSENAttSKRISLKITGYGK----TIDELRETET 246 ***********************955544456*********************988656667*********....99******** PP GRAS 164 rLakfAeel.gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 rL +fA+ + +++fef+ + l+ +l++L +++E+laVnl+++l +l s s+++++Lk v sl P +v +veqe Niben101Scf01365g06013.1 247 RLVSFAKGFrNISFEFQGV----LSGSKLNNLIKRKNETLAVNLMFHLNSLS--SY---SKISHTLKEVHSLCPSIVNIVEQEGC 322 *******9758*******7....77888999*9999**********999997..33...33568********************* PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse 331 + ++Fl rf+e+l+y++a+fdsl+ lp +s er +E+ lg+ei+nv+ e+++ rhe++e+Wr r+e+ GF +pls+ Niben101Scf01365g06013.1 323 KSPQNFLPRFMESLHYFAAMFDSLDDCLPIDSIERLRIEKNHLGKEIKNVLNYEKNNnFLSRHEQMETWRGRMESHGFLGLPLSS 407 ******************************************************9993569************************ PP GRAS 332 kaakqaklllrkvk.sdgyrve...........eesgslvlgWkdrpLvsvSaW 373 k+ +qaklll+ + s +++ e+ ++ l W+dr++v++SaW Niben101Scf01365g06013.1 408 KNIMQAKLLLKIRShSSPIQIDggnggfrifetEDPRAISLAWQDRSIVTASAW 461 **********977644444444444444444544455566************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 48.384 | 59 | 430 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-89 | 85 | 461 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MGDIVDQEEE LLCLRLAIVR NSCCERKKIK KRKRKELAFI NTWDLNESNY CEGKIFNLLE 60 LRESMLKIDV KKKGSVVEDG KGLHLIHSLL ISATAVDDNS FDSAVEDLHE LYQNVSILGD 120 SVQRVAAYFA DGLIARLLTR NSPFYDMIMK LPTQEEEFLA FTEFYKVSPF YQFAHFTSNQ 180 AILETFEKEE KTNNGLLHVI DFDISYGFQW PSLIQSLSEN ATTSKRISLK ITGYGKTIDE 240 LRETETRLVS FAKGFRNISF EFQGVLSGSK LNNLIKRKNE TLAVNLMFHL NSLSSYSKIS 300 HTLKEVHSLC PSIVNIVEQE GCKSPQNFLP RFMESLHYFA AMFDSLDDCL PIDSIERLRI 360 EKNHLGKEIK NVLNYEKNNN FLSRHEQMET WRGRMESHGF LGLPLSSKNI MQAKLLLKIR 420 SHSSPIQIDG GNGGFRIFET EDPRAISLAW QDRSIVTASA WHCVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-52 | 93 | 461 | 27 | 378 | Protein SCARECROW |
5b3h_A | 2e-52 | 93 | 461 | 26 | 377 | Protein SCARECROW |
5b3h_D | 2e-52 | 93 | 461 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 34 | KKIKKRKRK |
2 | 29 | 34 | KKRKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019224979.1 | 0.0 | PREDICTED: scarecrow-like protein 21 | ||||
TrEMBL | A0A314KU17 | 0.0 | A0A314KU17_NICAT; Protein scarecrow | ||||
STRING | XP_009792508.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12354 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 7e-58 | SCARECROW-like 21 |