PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Niben101Scf01362g03006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 282aa MW: 32159.8 Da PI: 5.8758

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01362g03006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.4e-17	89	142	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k Niben101Scf01362g03006.1 89 KKRRLNLEQVKALERSFEMGNKLEPERKMQLARVLGLKPRQIAIWFQNRRARCK 142 4557899*********************************************99 PP
2	HD-ZIP_I/II	127.5	5.5e-41	88	179	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L+++++ Niben101Scf01362g03006.1 88 EKKRRLNLEQVKALERSFEMGNKLEPERKMQLARVLGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKADNDALKTQNK 172 69********************************************************************************* PP HD-ZIP_I/II 86 eLreelk 92 +L++el+ Niben101Scf01362g03006.1 173 KLHSELQ 179 **997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-18	86	146	IPR009057	Homeodomain-like
SMART	SM00389	1.2E-17	87	148	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.018	88	144	IPR001356	Homeobox domain
CDD	cd00086	1.48E-15	89	145	No hit	No description
Pfam	PF00046	1.6E-14	89	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-18	91	151	IPR009057	Homeodomain-like
PRINTS	PR00031	2.8E-5	115	124	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	119	142	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.8E-5	124	140	IPR000047	Helix-turn-helix motif
Pfam	PF02183	9.8E-15	144	182	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MLFSSTDTMA FAPETNISVD FRNHEAANDD LPSSFPTHVF PSSCPPHQEF QGISPLVMRR 60 AMSFDHNQES RVEDDMSDDD GSSHLLGEKK RRLNLEQVKA LERSFEMGNK LEPERKMQLA 120 RVLGLKPRQI AIWFQNRRAR CKTKQLEKDY EILKRQCDKL KADNDALKTQ NKKLHSELQL 180 LSLGNRESAG GTPAILFNLN KENEGCNWNN NGSGDENNST IDVNLGTTTR TSSTNSPLNN 240 HDVFPTAYKV DQTVNEEGFC NMFTNVEDQT NFWSLPVQQH FY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	RRARCKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258561.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
TrEMBL	A0A314LFK7	0.0	A0A314LFK7_NICAT; Homeobox-leucine zipper protein hat7
STRING	XP_009775432.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	6e-62	homeobox 3