PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01353g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 782aa    MW: 89206 Da    PI: 6.9205
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01353g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS88.98.5e-2831401136
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaa 80 
                               lv+lLl++Ae v++++++la++l +r    as++g+p+qRl  yf++AL++r+ rs+ +   + + ++    +        + +a
  Niben101Scf01353g01011.1   3 LVHLLLAAAEEVNNQKFHLARKLTSRCVWVASQSGNPVQRLSLYFAKALEERIDRSTGRYTCTDEDRHL---KyiktmALGTNSA 84 
                               68*****************************************************43333222222222...1222223333444 PP

                      GRAS  81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                               + + +++ P+ ++ +++  q+Il+ v +++++H iDf+i+ G+QW  L+qaLa+++
  Niben101Scf01353g01011.1  85 FLTCHQLLPFSQVRQFAGVQTILDNVRSAKKIHLIDFNIKSGIQWTVLMQALAEKN 140
                               55589************************************************997 PP
2GRAS291.3e-09195250277332
                      GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                               r+s  r+++E  ++g+ i+n+va+eg+er+ r  +le Wr+ + ++G+   +ls++
  Niben101Scf01353g01011.1 195 RDSPCRRTIEGLYFGEGIRNIVAAEGKERFTRIVKLEVWRAFFARFGMVGEELSSD 250
                               78999********************************************9999987 PP
3GRAS293.46.1e-904117802374
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84 
                                + Ll+ Ae vs+++  +a+++L++ + las++g+p qR+++yf++AL++r+ r++ +l+ + ++ et+ +    s+  a++ +f
  Niben101Scf01353g01011.1 411 AQILLATAEKVSDQQYDCAKKMLSQCQPLASNTGNPAQRAVFYFAQALEERIDRETGKLMPKTHSVETDGSIciASRFDASYLTF 495
                               689***************************************************666666555555554443755555566677* PP

                      GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf 168
                               ++  P+ ++ h+t  qaIle+v+++ +vH iDf i  G+QW++L+qa a+R+ ++  +++iT+++s   ++ke++eetg+ L++f
  Niben101Scf01353g01011.1 496 HQEVPFTQVVHFTGIQAILESVATKPKVHLIDFLIRTGVQWASLIQAAAERTdNPIEHMKITVIES---VNKERVEETGKSLESF 577
                               ****************************************************55566*********...78************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++l+ p++f+++   + ++l+ ++++vkp+E +++  ++ l  +  e+ +le      +++v++l+P+++vv+e ea++ns+ F
  Niben101Scf01353g01011.1 578 AKSLNFPLSFKIVFLPDRNQLTKDHFDVKPDEGVVIYAAFFLRAMICEPSCLET----AMRVVRKLQPELMVVSEVEANLNSPMF 658
                               ************9999*****************************988888888....*************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               ++rf+++l yysa+fd+le  + r++e+r+++E +  g  i+n+v  eg+er+ r  +l  Wr+ ++++ +++v+lse+   qa+
  Niben101Scf01353g01011.1 659 VNRFIDSLFYYSAFFDCLEDVMKRDDEQRMTLESVTYGGGIRNIVGSEGKERVCRSVNLDVWRSYFKRFRMEEVKLSETCLYQAN 743
                               ************************************************************************************* PP

                      GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               l++++++  +  + + +  sl+  Wk+ p++s+SaW+
  Niben101Scf01353g01011.1 744 LIIQQFAcRNSCTADVNGRSLIVSWKGTPIYSTSAWK 780
                               *******88889999999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.4971153IPR005202Transcription factor GRAS
PfamPF035142.9E-253140IPR005202Transcription factor GRAS
PfamPF035144.5E-7195250IPR005202Transcription factor GRAS
PROSITE profilePS5098544.569384759IPR005202Transcription factor GRAS
PfamPF035142.1E-87411780IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MELVHLLLAA AEEVNNQKFH LARKLTSRCV WVASQSGNPV QRLSLYFAKA LEERIDRSTG  60
RYTCTDEDRH LKYIKTMALG TNSAFLTCHQ LLPFSQVRQF AGVQTILDNV RSAKKIHLID  120
FNIKSGIQWT VLMQALAEKN MKDFKKESVN IEADETVAVY CNTVLRTMIP KPDCLENLMK  180
VVRSIGPTVI DCMDRDSPCR RTIEGLYFGE GIRNIVAAEG KERFTRIVKL EVWRAFFARF  240
GMVGEELSSD HSLIGRREDI EKSYNQLSVM EDSTDIENFC TNYGSYQEYA VNPQVQEMNK  300
QQEEMNVYAV TPQVQTGSHV DKTHFSSLAP FELLRNNPSR CKNTEGDKIR NMNDRTNAYQ  360
KLSAMQIMKL AGERFIQFSS NKFININNLL HPYGSALLNL SPDDNQDVEL AQILLATAEK  420
VSDQQYDCAK KMLSQCQPLA SNTGNPAQRA VFYFAQALEE RIDRETGKLM PKTHSVETDG  480
SICIASRFDA SYLTFHQEVP FTQVVHFTGI QAILESVATK PKVHLIDFLI RTGVQWASLI  540
QAAAERTDNP IEHMKITVIE SVNKERVEET GKSLESFAKS LNFPLSFKIV FLPDRNQLTK  600
DHFDVKPDEG VVIYAAFFLR AMICEPSCLE TAMRVVRKLQ PELMVVSEVE ANLNSPMFVN  660
RFIDSLFYYS AFFDCLEDVM KRDDEQRMTL ESVTYGGGIR NIVGSEGKER VCRSVNLDVW  720
RSYFKRFRME EVKLSETCLY QANLIIQQFA CRNSCTADVN GRSLIVSWKG TPIYSTSAWK  780
FH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4342978022375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016493163.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S4BWE80.0A0A1S4BWE8_TOBAC; DELLA protein RGL1-like
STRINGXP_009797878.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139101114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-53RGA-like 2