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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01353g01011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 782aa MW: 89206 Da PI: 6.9205 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 88.9 | 8.5e-28 | 3 | 140 | 1 | 136 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaa 80 lv+lLl++Ae v++++++la++l +r as++g+p+qRl yf++AL++r+ rs+ + + + ++ + + +a Niben101Scf01353g01011.1 3 LVHLLLAAAEEVNNQKFHLARKLTSRCVWVASQSGNPVQRLSLYFAKALEERIDRSTGRYTCTDEDRHL---KyiktmALGTNSA 84 68*****************************************************43333222222222...1222223333444 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136 + + +++ P+ ++ +++ q+Il+ v +++++H iDf+i+ G+QW L+qaLa+++ Niben101Scf01353g01011.1 85 FLTCHQLLPFSQVRQFAGVQTILDNVRSAKKIHLIDFNIKSGIQWTVLMQALAEKN 140 55589************************************************997 PP | |||||||
2 | GRAS | 29 | 1.3e-09 | 195 | 250 | 277 | 332 |
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332 r+s r+++E ++g+ i+n+va+eg+er+ r +le Wr+ + ++G+ +ls++ Niben101Scf01353g01011.1 195 RDSPCRRTIEGLYFGEGIRNIVAAEGKERFTRIVKLEVWRAFFARFGMVGEELSSD 250 78999********************************************9999987 PP | |||||||
3 | GRAS | 293.4 | 6.1e-90 | 411 | 780 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84 + Ll+ Ae vs+++ +a+++L++ + las++g+p qR+++yf++AL++r+ r++ +l+ + ++ et+ + s+ a++ +f Niben101Scf01353g01011.1 411 AQILLATAEKVSDQQYDCAKKMLSQCQPLASNTGNPAQRAVFYFAQALEERIDRETGKLMPKTHSVETDGSIciASRFDASYLTF 495 689***************************************************666666555555554443755555566677* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakf 168 ++ P+ ++ h+t qaIle+v+++ +vH iDf i G+QW++L+qa a+R+ ++ +++iT+++s ++ke++eetg+ L++f Niben101Scf01353g01011.1 496 HQEVPFTQVVHFTGIQAILESVATKPKVHLIDFLIRTGVQWASLIQAAAERTdNPIEHMKITVIES---VNKERVEETGKSLESF 577 ****************************************************55566*********...78************** PP GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 A++l+ p++f+++ + ++l+ ++++vkp+E +++ ++ l + e+ +le +++v++l+P+++vv+e ea++ns+ F Niben101Scf01353g01011.1 578 AKSLNFPLSFKIVFLPDRNQLTKDHFDVKPDEGVVIYAAFFLRAMICEPSCLET----AMRVVRKLQPELMVVSEVEANLNSPMF 658 ************9999*****************************988888888....*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 ++rf+++l yysa+fd+le + r++e+r+++E + g i+n+v eg+er+ r +l Wr+ ++++ +++v+lse+ qa+ Niben101Scf01353g01011.1 659 VNRFIDSLFYYSAFFDCLEDVMKRDDEQRMTLESVTYGGGIRNIVGSEGKERVCRSVNLDVWRSYFKRFRMEEVKLSETCLYQAN 743 ************************************************************************************* PP GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 l++++++ + + + + sl+ Wk+ p++s+SaW+ Niben101Scf01353g01011.1 744 LIIQQFAcRNSCTADVNGRSLIVSWKGTPIYSTSAWK 780 *******88889999999******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.497 | 1 | 153 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-25 | 3 | 140 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.5E-7 | 195 | 250 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 44.569 | 384 | 759 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-87 | 411 | 780 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MELVHLLLAA AEEVNNQKFH LARKLTSRCV WVASQSGNPV QRLSLYFAKA LEERIDRSTG 60 RYTCTDEDRH LKYIKTMALG TNSAFLTCHQ LLPFSQVRQF AGVQTILDNV RSAKKIHLID 120 FNIKSGIQWT VLMQALAEKN MKDFKKESVN IEADETVAVY CNTVLRTMIP KPDCLENLMK 180 VVRSIGPTVI DCMDRDSPCR RTIEGLYFGE GIRNIVAAEG KERFTRIVKL EVWRAFFARF 240 GMVGEELSSD HSLIGRREDI EKSYNQLSVM EDSTDIENFC TNYGSYQEYA VNPQVQEMNK 300 QQEEMNVYAV TPQVQTGSHV DKTHFSSLAP FELLRNNPSR CKNTEGDKIR NMNDRTNAYQ 360 KLSAMQIMKL AGERFIQFSS NKFININNLL HPYGSALLNL SPDDNQDVEL AQILLATAEK 420 VSDQQYDCAK KMLSQCQPLA SNTGNPAQRA VFYFAQALEE RIDRETGKLM PKTHSVETDG 480 SICIASRFDA SYLTFHQEVP FTQVVHFTGI QAILESVATK PKVHLIDFLI RTGVQWASLI 540 QAAAERTDNP IEHMKITVIE SVNKERVEET GKSLESFAKS LNFPLSFKIV FLPDRNQLTK 600 DHFDVKPDEG VVIYAAFFLR AMICEPSCLE TAMRVVRKLQ PELMVVSEVE ANLNSPMFVN 660 RFIDSLFYYS AFFDCLEDVM KRDDEQRMTL ESVTYGGGIR NIVGSEGKER VCRSVNLDVW 720 RSYFKRFRME EVKLSETCLY QANLIIQQFA CRNSCTADVN GRSLIVSWKG TPIYSTSAWK 780 FH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-43 | 429 | 780 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016493163.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1S4BWE8 | 0.0 | A0A1S4BWE8_TOBAC; DELLA protein RGL1-like | ||||
STRING | XP_009797878.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13910 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 3e-53 | RGA-like 2 |