PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01338g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 376aa    MW: 43113.9 Da    PI: 8.4521
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01338g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP133.22.5e-411302492136
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 
                               +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++  ++++++       s+++++
  Niben101Scf01338g02001.1 130 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELSRD-IPQENNT-------SSDQNN 206
                               79**************************************************************.3333222.......222122 PP

                       TCP  87 sgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                               +   +ks+  + ++      +++l+k e + + rarare+t+ekm+ik ++
  Niben101Scf01338g02001.1 207 IM--SKSHILECED------HRKLKKmELKDNPRARARENTKEKMMIKGHK 249
                               22..2222222222......2344444556667799999*******99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-39130254IPR005333Transcription factor, TCP
PROSITE profilePS5136937.361132190IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFPKSNINDP FSYTSQELLK HSYTHGAYHQ NPNSTSIIVE DHPFLLNNFP SPFLDDNESP  60
LSQIFSQQQQ QQQELEASDH HPDVEVDPNT STFGRANVKI IEDQSSNPNV ELVSPSSKKR  120
KLSVKPRRRT GKKDRHSKIC TAQGVRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF  180
SKSKNAIKEL SRDIPQENNT SSDQNNIMSK SHILECEDHR KLKKMELKDN PRARARENTK  240
EKMMIKGHKK GKEMYEANPK NVNILGSNSQ SLENKFANVG IMESYLGGTS SSISSIFDYQ  300
NSGVRGGNID YFDNCYMGFL ENWDNKNSNI SCSTTTTTNE VQIPFAGNNN TSSIYLDNSR  360
YQFQFLDQEN HFSCRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118128KRKLSVKPRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264334.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A314L4T70.0A0A314L4T7_NICAT; Transcription factor tcp12
STRINGXP_009760495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-33TCP domain protein 12