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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf01326g07001.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
HD-ZIP |
| Protein Properties |
Length: 222aa MW: 25039.8 Da PI: 6.796 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf01326g07001.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.9 | 7e-18 | 93 | 146 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
Niben101Scf01326g07001.1 93 KKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWK 146
4557899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 121.4 | 4.5e-39 | 92 | 166 | 1 | 75 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75
ekkrrl+ eqvk+LE+sFe +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlE+dye Lkr+ydalke
Niben101Scf01326g07001.1 92 EKKRRLNLEQVKALERSFEVANKLEPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLERDYEILKRQYDALKE 166
69**********************************************************************987 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MLSSTTGIMA LVPSTPEISI NFQDNHNIPS TSPKVFPSPC NIPHQDFNGI SSMLMRRSMS 60
FSGVERCDNH QDLRVDDNEM SDDDGSSQLL GEKKRRLNLE QVKALERSFE VANKLEPERK 120
IQLARALGLQ PRQIAIWFQN RRARWKTKQL ERDYEILKRQ YDALKESGGG GAPMINLNKE 180
NEGSWSNGSE ENNSIDVNFG TTTATRTSSG DSPFYSNNNK NN
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 140 | 148 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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