PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf01295g05007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 1126aa MW: 125937 Da PI: 8.9261

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01295g05007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.6e-08	44	79	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ ++++a +++G++ Wk++a+ + Rt +++ Niben101Scf01295g05007.1 44 EWSEEDLTRFYQAYRKYGKD-WKKVAAAVK-PRTSEMV 79 7***************99.****998.7887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.51E-9	39	88	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-4	41	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.2E-4	44	79	IPR009057	Homeodomain-like
CDD	cd00167	7.14E-6	44	79	No hit	No description
Pfam	PF00249	1.6E-6	44	80	IPR001005	SANT/Myb domain
Pfam	PF06584	1.7E-33	620	720	IPR033471	DIRP domain
SMART	SM01135	2.5E-58	620	721	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1126 aa Download sequence Send to blast
MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY 60 GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ 120 ESNEDAGTSR KPQKRARGKV QSNISKASEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK 180 RTPRFPVSFS YGNPKGEKFF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP 240 NRRTDSAMSS PVETAERKRV NIGMGNAKLL SNEVDEEEGS MEADTGELLR YKNDTVETGT 300 FGRTAQKGRR PYGKNLEIDD NGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR 360 TSLQGPRKRS KKVLFSRDES SAFDALQTLA DLSLMMPTAE NEDESTIRFN DEIDDHVDES 420 GSLEAVPANI QRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR 480 AHKVMSSKAR KTEGHVNNNV TGSEEAEAKQ ASKKSTNKGK RSYQSASPKL IKDQEPSSCA 540 DPRTERSDSA QSTAEIPVAN QVNLPTKVRS RRKMDLKKPQ RQKDLKIPDK SLDDTTASFT 600 ALHDRPFSLK VRRWCTYEWF YSAIDYPWFA KRDFVEYLNH VGLGHVPRLT RVEWGVIRSS 660 LGKPRRFSEQ FLNEEKEKLN QYRESVRTHY TELREGTREG LPTDLARPLS VGQRVIAIHP 720 KTREIHDGSV LTVDRSRCRV QFDRPELGVE FVRDIDCMPL NPFENMPTLL TRRADAVDKF 780 FESFNELKVN ARANEYMKFP ACDNMENGNV FSHFSPPSHP ISDLLKQTKV ASAEVDMQSR 840 SGVIESATYQ STAYSKSSGV AQIQAKEADV QALAELARAL DKKEAVVSEL RRMNDDVLEN 900 QKSNDCSLKD SEPFKKQYAA MLIQLNEVNE EVSSALYRLR QRNTYQGSIP LAFPRPVPNF 960 ADPSTLSTFD RCTSQPKESG FLVNEIIESS KIKARTMVDA AVQAMLSLTD RDNTTEKIEE 1020 AIGYVNDRIS LDDSCMPTQP TDPKSKNMSD KNEAEIPSEL ITKCVATLLM IQKCSERQFP 1080 PADVAKVLDS AVASLQPCCS QNFPIYAEIQ QCMGIIRNQI LALVPM

Sequence ? help Back to Top

Protein Sequence Length: 1126 aa Download sequence Send to blast

MAPARKSRSV NKRFSPTTEI SPSKDDSAKK NLRKRKLSDM LGPEWSEEDL TRFYQAYRKY  60
GKDWKKVAAA VKPRTSEMVE ALYMMNRAYL SLPEGTASVV GLIAMMTDHY CNLAASDSEQ  120
ESNEDAGTSR KPQKRARGKV QSNISKASEM TSPTLAASHG CLTLLKKKRS GGSRPRAVGK  180
RTPRFPVSFS YGNPKGEKFF SPSRQSLKLQ ADDTDDDVKI ALVLTEASQR GGSPQVSQTP  240
NRRTDSAMSS PVETAERKRV NIGMGNAKLL SNEVDEEEGS MEADTGELLR YKNDTVETGT  300
FGRTAQKGRR PYGKNLEIDD NGANHFDDIK EACSGTEEGQ ILGVVRGKLE MEATYEKNSR  360
TSLQGPRKRS KKVLFSRDES SAFDALQTLA DLSLMMPTAE NEDESTIRFN DEIDDHVDES  420
GSLEAVPANI QRDKRGSGGV RSRWSQPLSK FEVASTTKSK HGKVTSTDVS AVPETKQARR  480
AHKVMSSKAR KTEGHVNNNV TGSEEAEAKQ ASKKSTNKGK RSYQSASPKL IKDQEPSSCA  540
DPRTERSDSA QSTAEIPVAN QVNLPTKVRS RRKMDLKKPQ RQKDLKIPDK SLDDTTASFT  600
ALHDRPFSLK VRRWCTYEWF YSAIDYPWFA KRDFVEYLNH VGLGHVPRLT RVEWGVIRSS  660
LGKPRRFSEQ FLNEEKEKLN QYRESVRTHY TELREGTREG LPTDLARPLS VGQRVIAIHP  720
KTREIHDGSV LTVDRSRCRV QFDRPELGVE FVRDIDCMPL NPFENMPTLL TRRADAVDKF  780
FESFNELKVN ARANEYMKFP ACDNMENGNV FSHFSPPSHP ISDLLKQTKV ASAEVDMQSR  840
SGVIESATYQ STAYSKSSGV AQIQAKEADV QALAELARAL DKKEAVVSEL RRMNDDVLEN  900
QKSNDCSLKD SEPFKKQYAA MLIQLNEVNE EVSSALYRLR QRNTYQGSIP LAFPRPVPNF  960
ADPSTLSTFD RCTSQPKESG FLVNEIIESS KIKARTMVDA AVQAMLSLTD RDNTTEKIEE  1020
AIGYVNDRIS LDDSCMPTQP TDPKSKNMSD KNEAEIPSEL ITKCVATLLM IQKCSERQFP  1080
PADVAKVLDS AVASLQPCCS QNFPIYAEIQ QCMGIIRNQI LALVPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	35	KNLRKRK
2	31	36	LRKRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009595580.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_009595581.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018624867.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1J6HVB4	0.0	A0A1J6HVB4_NICAT; Protein always early 3
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]