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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01295g05006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 348aa MW: 39222.8 Da PI: 4.7249 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 56 | 104 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta+eAa a+++a+++++g Niben101Scf01295g05006.1 56 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 104 56******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.613 | 55 | 112 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-28 | 55 | 111 | No hit | No description |
SMART | SM00380 | 9.1E-32 | 55 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-28 | 56 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-20 | 56 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-7 | 56 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-11 | 58 | 104 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-7 | 78 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSSSSTPSSE NINQLPFGMF EPIRTPTGYS WLQRNTAICQ PSEKRGRRKQ AEPGRFLGVR 60 RRPWGRYAAE IRDPTTKERH WLGTFDTAQE AALAYDRAAL SMKGTQARTN FIYTCDNNNS 120 FPSLISPFYS VQNILQPNSH FNFKNAPTQN NNKNVITTTT SDNETSNNSH DSYSSSPNEN 180 NSFFLTPSHE NSGYLDCIVP DSCLKPPPSS TPQSKMITKN SQENSNIDHH QNYITTFSEN 240 PSNFSFNSGF WDGDDQEMYT SSWENSCELS AMMMNNNIMS SNSEINGNNI KEMVDVGDCY 300 YPSMEINAAF DHDNMIVQPS EITTTNTTTT SSSIFQPFSD VEFGYSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 46 | 111 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019226012.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF086-like | ||||
TrEMBL | A0A1S3YNJ3 | 0.0 | A0A1S3YNJ3_TOBAC; ethylene-responsive transcription factor ERF086-like | ||||
STRING | XP_009774843.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009588287.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9307 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-53 | ERF family protein |