PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01272g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 213aa MW: 24230.8 Da PI: 9.7193 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47 | 4.7e-15 | 101 | 190 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k +++s+v++ +l lp+ f++ h ++ ++t+tl des ++++ k+ ++++ l++GW++F a +L egD++vF+l Niben101Scf01272g00016.1 101 FMKPMIRSNVTAGLWLFLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLARNLVEGDVLVFQLF 179 899********************8884..35678****************555555....9**********************86 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + + l+v ++r Niben101Scf01272g00016.1 180 RFCK--LKVYIVR 190 5344..4777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04520 | 1.2E-8 | 9 | 54 | IPR007608 | Senescence regulator S40 |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 93 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.06E-20 | 94 | 192 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-20 | 99 | 190 | No hit | No description |
SMART | SM01019 | 1.2E-16 | 101 | 192 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.829 | 101 | 192 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-13 | 101 | 191 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MCNGVKMIPK SNKNSIHEQK IAQQSAPVNI PDWSKIYGTS SKKTSWHDGN NDDSGGGGYS 60 FLCKKKMEMM QSLYGRFDLA SSSKYRAEEV QSKLSTKYPS FMKPMIRSNV TAGLWLFLPR 120 FFCQLHLPRH DTTVTLVDES QEEYKTKYLA ERNGLSGGWR GFSLARNLVE GDVLVFQLFR 180 FCKLKVYIVR ANYLAEVDAV PCSSAFRCPS KTY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019258001.1 | 2e-92 | PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X3 | ||||
Refseq | XP_019258002.1 | 2e-92 | PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X3 | ||||
TrEMBL | A0A1J6IMH7 | 4e-91 | A0A1J6IMH7_NICAT; B3 domain-containing protein | ||||
STRING | XP_009778967.1 | 7e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13184 | 12 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 6e-42 | B3 family protein |