PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf01272g00004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 471aa MW: 53059.6 Da PI: 5.1304

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01272g00004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.2	2.2e-16	66	156	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ++ps+v +l +pkkf+++h +k + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l+ Niben101Scf01272g00004.1 66 FVKFMLPSHVAGGFWLGFPKKFCDRHL-PK-HDDTVVLVDEDEQEYASKYLVDKTG----LSGGWRGFSIAHCLLHGDVLIFQLI 144 89**********************4.33.3459***********888888....*********************** PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 + s+f +v ++r+ Niben101Scf01272g00004.1 145 QPSKF--KVYIIRE 156 99999..8888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-19	60	157	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-23	60	157	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.58E-25	64	155	No hit	No description
SMART	SM01019	1.9E-21	66	157	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.815	66	157	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-14	66	156	IPR003340	B3 DNA binding domain
Pfam	PF05266	1.3E-9	349	452	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MAISAMYSSK KSPLLSSSKR KNGDNKKVLL CPEKKANKPS TVDANSSAML RAEEVQANLP 60 SQFPSFVKFM LPSHVAGGFW LGFPKKFCDR HLPKHDDTVV LVDEDEQEYA SKYLVDKTGL 120 SGGWRGFSIA HCLLHGDVLI FQLIQPSKFK VYIIRENALT ELDGAISLLN LDFHTRPIES 180 DQIEDMKICE AKEQKYLEPP VLDTHQDDKL EIDGAISLLK LDFRARPIKS EMKICEAKEE 240 KYLEPSVIDI DQDDKNEEAI PVQYSDQGPA SDEFLNDSDN SSEVLGIRFS ESRFEFKDVK 300 DFSGFNILVD GLIVDSEIPA HIRTKYYNLC CTQKSFLHDH LLGGLNCKLA AGMITETVNI 360 ADAIRASNIS TSRDYLEAWN NTLKGFECLG MEVGFLRARL NKLVGLSSES QQILESKRNE 420 LAEAKEEMRN LETKLLKVKQ VIKNLESEIE LTTKDISFEL KFKAMAAAPW S

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MAISAMYSSK KSPLLSSSKR KNGDNKKVLL CPEKKANKPS TVDANSSAML RAEEVQANLP  60
SQFPSFVKFM LPSHVAGGFW LGFPKKFCDR HLPKHDDTVV LVDEDEQEYA SKYLVDKTGL  120
SGGWRGFSIA HCLLHGDVLI FQLIQPSKFK VYIIRENALT ELDGAISLLN LDFHTRPIES  180
DQIEDMKICE AKEQKYLEPP VLDTHQDDKL EIDGAISLLK LDFRARPIKS EMKICEAKEE  240
KYLEPSVIDI DQDDKNEEAI PVQYSDQGPA SDEFLNDSDN SSEVLGIRFS ESRFEFKDVK  300
DFSGFNILVD GLIVDSEIPA HIRTKYYNLC CTQKSFLHDH LLGGLNCKLA AGMITETVNI  360
ADAIRASNIS TSRDYLEAWN NTLKGFECLG MEVGFLRARL NKLVGLSSES QQILESKRNE  420
LAEAKEEMRN LETKLLKVKQ VIKNLESEIE LTTKDISFEL KFKAMAAAPW S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513019.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A1S4DIB1	0.0	A0A1S4DIB1_TOBAC; B3 domain-containing protein Os01g0234100-like
STRING	XP_009778963.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-40	B3 family protein