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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01234g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 60738.6 Da PI: 6.0321 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 422 | 5e-129 | 173 | 542 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 +elL +cAeavs+ d + a+ l++ l++++s +g+pm+Rl ay++e+L+arl++s+s +yk+l+++e + sse l+++++ ++ Niben101Scf01234g01012.1 173 KELLDACAEAVSDADVSTAEVLMNILEQRVSVSGEPMERLSAYVLEGLRARLLSSGSIIYKKLKCKEPT---SSELLSYMQVIYN 254 78999***************************************************************9...9************ PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169 ++P++kf+++ aN I ea+ +e+r+HiiDf+i qG QW+ Ll+ La Rp+gpp lRiTgv++++s + l+ +gerLa++A Niben101Scf01234g01012.1 255 MCPYYKFAYMSANVVIREAMTNENRIHIIDFQIAQGSQWMFLLHDLARRPGGPPFLRITGVDDSQSAhaRGGGLQLVGERLAEVA 339 ***************************************************************9988889999************ PP GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +++gvpfef+ +a + +++le+L+v++gEalaVn+ ++lh+++desvs+ ++rd++L+lvk+lsPk+v++veqe+++n+++Fl Niben101Scf01234g01012.1 340 KSCGVPFEFHG-AALSGCEVQLENLHVRHGEALAVNFPYMLHHMPDESVSMINHRDRLLRLVKNLSPKIVTLVEQESNTNTAPFL 423 ***********.8999********************************************************************* PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 rf e+l+yy+a+f+s++a pr++++ri+ E+++++r+ivn++aceg +r+erhe ++kWr rl++aGF+p pls ++ ++++ Niben101Scf01234g01012.1 424 PRFRETLDYYTAMFESINAARPRDDKQRISAEEHCVARDIVNIIACEGVDRVERHELFGKWRLRLMMAGFTPCPLSPSVGETIND 508 *****************9999**************************************************************** PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l++++ + yr e++g+l+lgWk+r+L + SaWr Niben101Scf01234g01012.1 509 VLKEYSPN-YRFAESEGALYLGWKNRALATSSAWR 542 ******55.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.935 | 146 | 523 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-126 | 173 | 542 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MQASQRPQMS GGVHGLYNQP MQQVEQYYAP YHFKNNNCNN TSSVTQFAFQ TQNEHFFTLD 60 SLPATDYVVY DSPPALSVSS NRSPFSPQCS HSYMSDLHHS SDNNTCGSPF SGCSGVDDGD 120 LKHVLRELEN KLLGPESDTD DSCSCSFNDV VSKPSSLTRW NRVLDMAPSL NLKELLDACA 180 EAVSDADVST AEVLMNILEQ RVSVSGEPME RLSAYVLEGL RARLLSSGSI IYKKLKCKEP 240 TSSELLSYMQ VIYNMCPYYK FAYMSANVVI REAMTNENRI HIIDFQIAQG SQWMFLLHDL 300 ARRPGGPPFL RITGVDDSQS AHARGGGLQL VGERLAEVAK SCGVPFEFHG AALSGCEVQL 360 ENLHVRHGEA LAVNFPYMLH HMPDESVSMI NHRDRLLRLV KNLSPKIVTL VEQESNTNTA 420 PFLPRFRETL DYYTAMFESI NAARPRDDKQ RISAEEHCVA RDIVNIIACE GVDRVERHEL 480 FGKWRLRLMM AGFTPCPLSP SVGETINDVL KEYSPNYRFA ESEGALYLGW KNRALATSSA 540 WR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 6e-61 | 179 | 541 | 25 | 377 | Protein SCARECROW |
5b3h_D | 6e-61 | 179 | 541 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016487801.1 | 0.0 | PREDICTED: scarecrow-like protein 13 | ||||
Swissprot | Q9M0M5 | 0.0 | SCL13_ARATH; Scarecrow-like protein 13 | ||||
TrEMBL | A0A1S4BG19 | 0.0 | A0A1S4BG19_TOBAC; scarecrow-like protein 13 | ||||
STRING | XP_009773976.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA681 | 24 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17230.1 | 0.0 | SCARECROW-like 13 |