PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Niben101Scf01232g03009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 295aa MW: 32552 Da PI: 9.7186

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf01232g03009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.7	2.2e-12	50	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Niben101Scf01232g03009.1 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-16	44	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.18	45	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-6	48	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-18	48	97	IPR006447	Myb domain, plants
SMART	SM00717	6.5E-10	49	97	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-10	50	94	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-7	52	95	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MVMALPNIGS FSNPTATASA AATASASSPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK 60 FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY 120 PQKASKSAPS LSPVTASFQA SLPLPDPGFV TRPDTSLLPS NPVTVTSVPS WTDNSVPPVS 180 LSQMKKDNMR EPGQPVSNTH CCSSNESTPG SKSTVLPDFV QVYNFIGSVF DPAVTGHLQK 240 LKKMDRIDVE TVLLLMRNLS INLTSPDFEH HRQLLSSYDM DMEKQCKSSH QLQPT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802901.1	0.0	PREDICTED: protein REVEILLE 6
Refseq	XP_016499974.1	0.0	PREDICTED: protein REVEILLE 6-like
Swissprot	Q8H0W3	1e-105	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A1S4CG80	0.0	A0A1S4CG80_TOBAC; protein REVEILLE 6-like
TrEMBL	A0A1U7YLN6	0.0	A0A1U7YLN6_NICSY; protein REVEILLE 6
STRING	XP_009802901.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	7e-91	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]