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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01214g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 34319.6 Da PI: 8.1272 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.9 | 6e-40 | 40 | 101 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k++al+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknkksss Niben101Scf01214g00004.1 40 KDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNIPVGGGSRKNKKSSS 101 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 28 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.7E-34 | 41 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.161 | 44 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 46 | 82 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDTAQWPQEI VVKPMEEIIQ NTNGSSKPNS CVERKVRPQK DQALNCPRCN STNTKFCYYN 60 NYSLSQPRYF CKTCRRYWTA GGSLRNIPVG GGSRKNKKSS SNSSSYSNHV NNPLKKLPDL 120 VNPPSHNHDQ NPSNIHIEGS QDLNLGFSSD FKTITELIQV PNYDGNNKDN NSPSISPLPP 180 PPPPSSSSSA SSSSQLSALE LINGITSRGM NNNSFMSMAS ISTDPNSVYN NSSGFSLPSL 240 NFSLDHGLGN AAYGNNIQET NTSGRFLFPF VGLKQISSTN TTNDGGNENN RDHHQPAEES 300 TNGFWNGMLG GGGSW |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766033.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
Refseq | XP_016469483.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1S3ZYQ1 | 0.0 | A0A1S3ZYQ1_TOBAC; dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1U7VI71 | 0.0 | A0A1U7VI71_NICSY; dof zinc finger protein DOF4.6-like | ||||
STRING | XP_009766033.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64620.1 | 2e-46 | Dof family protein |