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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01212g03007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 397aa MW: 44683.2 Da PI: 7.1094 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.7 | 7.4e-28 | 32 | 129 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f vhk+FG snv+k +k+l++ +++a++s ++eA+ +++dPv+G +g ++kl Niben101Scf01212g03007.1 32 ACASCKHQRKKCIEGeCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSLDDVAeQDEAIKSFFWEARLWQEDPVHGPLGKYKKL 116 7***********9866**********************************766549***************************** PP DUF260 84 qqqleqlkaelal 96 +qql++l +e Niben101Scf01212g03007.1 117 EQQLKELMEEKRI 129 ******9988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.013 | 31 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-28 | 32 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MSDNKNNNVE EAGTEAADAV ESHEVAGSNR PACASCKHQR KKCIEGECVM WRHFPASKMD 60 EFLGVHKVFG ISNVTKKIKS LDDVAEQDEA IKSFFWEARL WQEDPVHGPL GKYKKLEQQL 120 KELMEEKRIK ELQIVQLPDV PCPPTASEIS CLDEMVARRQ ISTISTLSDQ EDYLLNSTAP 180 NYCTLLQGRG VFPSHYNNPI EQRQNTLIPR QVFQGVQFQQ YPCRTLQAEG RGISHLANYN 240 GHVQLHQQRC LHNNIDLGQG ITRGRRRKEC SDLQLVSPSC IGRHVRGRGI EPISSGGRHG 300 AIMSTSSSAS FADQWTDNSN KTMLRDTTGG RHCEVTIPLP SAVQNIAADG SNRRAEDFQH 360 HFTNYNHNNL PVEGYFRPTL EGCPLMWLPC HSHVDAM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-14 | 27 | 126 | 7 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-14 | 27 | 126 | 7 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009769644.1 | 1e-136 | PREDICTED: uncharacterized protein LOC104220462 | ||||
TrEMBL | A0A1J6ITB1 | 0.0 | A0A1J6ITB1_NICAT; Lob domain-containing protein 2 | ||||
STRING | XP_009619683.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14094 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-17 | LOB domain-containing protein 2 |