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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf01209g05011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 24303.1 Da PI: 4.2018 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.2e-14 | 53 | 140 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 ffkv ++++++k++ +p +f+ e+g + + ++le ++g W+vkl ++sg+ ++++GW++F + + g f++F+++ Niben101Scf01209g05011.1 53 FFKVILSPHASKLH---IPDEFMMEYGDN--LQDLVSLEVPNGAIWKVKL--HNCSGTAWFKEGWNKFKEYYSIGCGYFLLFRYN 130 88888888888876...*********977..6669***************..********************************* PP SSSEE..EEEEE CS B3 86 grsefelvvkvf 97 g+s+f v +f Niben101Scf01209g05011.1 131 GNSRF--SVFIF 140 *9999..55555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-22 | 48 | 143 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.92E-22 | 50 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.406 | 50 | 143 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.59E-17 | 51 | 141 | No hit | No description |
SMART | SM01019 | 9.2E-12 | 53 | 143 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-11 | 53 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSPDEGIDFS RCSLNKQNFN ITLPHEAQTA EKVERRLPEE PKSVDSPEAP PQFFKVILSP 60 HASKLHIPDE FMMEYGDNLQ DLVSLEVPNG AIWKVKLHNC SGTAWFKEGW NKFKEYYSIG 120 CGYFLLFRYN GNSRFSVFIF DLSASEIDYP PGPNEDEISP SLNEDLTPEI SPGQNEDLTP 180 ENLCVVAEPE GNPLTCQENS CAETLLTISQ PSRPNV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483682.1 | 1e-138 | PREDICTED: B3 domain-containing protein At1g49475-like | ||||
TrEMBL | A0A1S4B430 | 1e-137 | A0A1S4B430_TOBAC; B3 domain-containing protein At1g49475-like | ||||
STRING | XP_009603775.1 | 1e-137 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-28 | B3 family protein |