PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01202g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 250aa    MW: 26259.7 Da    PI: 4.9784
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01202g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.94.5e-081712082663
                               HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1  26 aeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               ae++eL++++++L++eN +L+ el++l+ e ++l +++
  Niben101Scf01202g00001.1 171 AECDELAQRAEALKEENASLRAELSRLRSEHDQLAAQN 208
                               89******************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165965.3E-3446154No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-5171207No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MCSSIYSSGI LPFSPFAMPS PNGVAEAAVN TSGNAEVDGK SSDGKEKLPI KRSKGSLGSL  60
NMISGKNNEP GKTSGASANG AYSKSAESGS DGSSEGSDAN SQNVGVTNEG KIQYDVSATA  120
EAFQNGNSAH SSHNGGASAP HSLINQTMPI MPMCILKTQF KIVYFSYMGA AECDELAQRA  180
EALKEENASL RAELSRLRSE HDQLAAQNAS LKERLGEVPE QEDLRPSRND IHLSKDTQNS  240
SQTEPTQGGQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016508279.18e-90PREDICTED: bZIP transcription factor 16-like
RefseqXP_016508280.18e-90PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B22e-46BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2G3DCN23e-91A0A2G3DCN2_CAPCH; Uncharacterized protein
STRINGSolyc08g076100.2.11e-72(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-37basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]