PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01158g03010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 702aa    MW: 76849 Da    PI: 6.3721
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01158g03010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-1859114156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t+ q++e+e++F+++++p+ ++r+eL k+l L+  qVk+WFqN+R+++k
  Niben101Scf01158g03010.1  59 KKHYHRHTQIQIQEMEAFFKECPHPDDKQRKELGKRLALEPLQVKFWFQNKRTQMK 114
                               688999***********************************************998 PP
2START1801.4e-562484531206
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                               ela +a++el+++a+ +ep+W +s+    e + ++e++++f+          r +g  +  l ++ +    ++ qW+  +a    
  Niben101Scf01158g03010.1 248 ELAVAAMEELIRMAQTREPLWISSPdnstETLCEEEYVRTFP----------RGIGPKPLGLKTEASRASAVN-QWTSVFAglvs 321
                               57899********************44444444555555554..........556666666666666666688.99999999999 PP

                               EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEE CS
                     START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgilie 155
                               +a+tlev+s+g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w+++dvS+d+ ++ +      R++++pSg+li+
  Niben101Scf01158g03010.1 322 RAMTLEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVADVSLDNLRPTSP----SRCRRRPSGCLIQ 402
                               9***************************************************************9875....8************ PP

                               EECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 156 pksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               +++ng+skvtw+eh+++++r +h+++r+lv+sgla+gak+wvatl+rqce+
  Niben101Scf01158g03010.1 403 ELPNGYSKVTWIEHIEVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 453
                               *************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-2140114IPR009057Homeodomain-like
SuperFamilySSF466898.77E-1841116IPR009057Homeodomain-like
PROSITE profilePS5007115.56456116IPR001356Homeobox domain
SMARTSM003892.9E-1558120IPR001356Homeobox domain
PfamPF000464.8E-1659114IPR001356Homeobox domain
CDDcd000864.19E-1659117No hitNo description
SuperFamilySSF559611.65E-29239455No hitNo description
PROSITE profilePS5084841.388239456IPR002913START domain
CDDcd088755.05E-115243452No hitNo description
SMARTSM002342.3E-53248453IPR002913START domain
PfamPF018521.2E-47249453IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-6335453IPR023393START-like domain
SuperFamilySSF559614.94E-16473694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MFQTNMFESH HHLLDMSHKS LENELDLIRD DEFDTKSGTD IMENPSGDDQ DPNQRPNKKK  60
HYHRHTQIQI QEMEAFFKEC PHPDDKQRKE LGKRLALEPL QVKFWFQNKR TQMKAQHERL  120
ENSQLRNENE KLRAENIRYK EALGNATCPN CGGPAAIGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPMLTYPNLP STGSNRSLDL GVGNFGPQTG LVGEMYSAGD LLRSVSGPTD  240
ADKPIIIELA VAAMEELIRM AQTREPLWIS SPDNSTETLC EEEYVRTFPR GIGPKPLGLK  300
TEASRASAVN QWTSVFAGLV SRAMTLEVLS TGVAGNYNGA LQVMTAEFQV PSPLVPTREN  360
YFVRYCKHHA DGTWAVADVS LDNLRPTSPS RCRRRPSGCL IQELPNGYSK VTWIEHIEVD  420
DRAVHNIYRP LVNSGLAFGA KRWVATLDRQ CERLASAMAN NIPTGDVGVI TSPEGRRSML  480
KLAERMVMSF CAGVGASTAH TWTTLSGSGA DDVRVMTRKS IDDPGRPPGI VLSAATSFWL  540
PVPPKRWDIL SNGGLVQEMA HIANGRDSGN CVSLLRVNSG NSSQSNMLIL QESSTDSTGS  600
YVIYAPVDIV AMNAVLSGGD PDYVALLPSG FAILPDGSMS SHCGGNNVAE VGNGGSLLTV  660
AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKTAVACD NA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019249652.10.0PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A1J6IZ030.0A0A1J6IZ03_NICAT; Homeobox-leucine zipper protein meristem l1
STRINGXP_009799795.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]