PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01153g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 412aa    MW: 46478.6 Da    PI: 8.0293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01153g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.85.8e-29501791128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                               lp+G++F+Ptd+el+ e+L++kv +kk + ++  i+e     + P  ++  v+++  + +fF++ +k+y+tg+rk+r+++     
  Niben101Scf01153g00009.1  50 LPAGVKFDPTDQELI-EHLEAKVVSKKESKSHPlIDE-----FIPT-IE-GVTKDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 126
                               799************.99*999998886554442443.....4443.33.344455688******************73334555 PP

                       NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                  + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Niben101Scf01153g00009.1 127 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 179
                               544778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575116No hitNo description
SuperFamilySSF1019417.19E-3446198IPR003441NAC domain
PROSITE profilePS5100528.11350198IPR003441NAC domain
PfamPF023653.4E-1651179IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MNKSSSSHQL GSISSCDLID AKLEEHQLCG SKQCPGCGQK LEGKPDWVGL PAGVKFDPTD  60
QELIEHLEAK VVSKKESKSH PLIDEFIPTI EGVTKDGLSR HFFHRPSKAY TTGTRKRRKI  120
QTECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT NWVMHQYHLG  180
QNEEEREGEL VVSKIFYQTQ PRQCNTWSNN ERSINNRDHS GSGSCSSSKE MNNINPNSHG  240
HRNELSAAVG AAVSTNYNTI NNHFGFLPFR RNFDEAGIMD AETSMGRRDD QAAGTCEEPE  300
SQRQIPHHVT HEPSHQHQHQ HQNHHQNQIA TTTAFNISRP SLPISATIAP PPHLHHTSVI  360
LDHDSFHVPR NYNFQQQQQQ QHHKLGGRSE SGLEELIMGC TSTDIKEVQN LS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595150.10.0PREDICTED: NAC domain-containing protein 101-like isoform X1
RefseqXP_009595151.10.0PREDICTED: NAC domain-containing protein 101-like isoform X1
RefseqXP_016471013.10.0PREDICTED: NAC domain-containing protein 101-like isoform X1
RefseqXP_016471014.10.0PREDICTED: NAC domain-containing protein 101-like isoform X1
SwissprotQ9M0F81e-145NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1S4A3050.0A0A1S4A305_TOBAC; NAC domain-containing protein 101-like isoform X1
STRINGXP_009595150.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40572444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-135NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]