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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf01143g10001.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
TCP |
Protein Properties |
Length: 327aa MW: 36682.6 Da PI: 7.8908 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf01143g10001.1 | genome | BTI | - |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 95.4 | 1.1e-29 | 51 | 149 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsss 87
g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++ +++ +s+++ +++ +
Niben101Scf01143g10001.1 51 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAQFQSDHQFDHAANL 135
78*************************************************************8888755522222222221111 PP
TCP 88 g............k 89
+
Niben101Scf01143g10001.1 136 RakskvidtdtvyG 149
12333333433331 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0030154 | Biological Process | cell differentiation |
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MNSRGNHFQA KQESGGTNNS KLTSKATTST SSRQWGGFKN PRIVRVSRTF GGKDRHSKVC 60 TIRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI EATKHEIDKL PPLQIPPGYF 120 AQFQSDHQFD HAANLRAKSK VIDTDTVYGK NKSIASNEQE NQEEIGGYVP QISAQSFFPL 180 GNRSPNLPGL INNSMPFNSY YPWEPNSNLS LSHFGQPQIE ESSQNNFPLS LASSLSLPSG 240 SQLYFNPIAT TFSPMISPYM TNYPIENDPR AQLNHFHFLS SSSQHVLTNP PVSTLNLIKP 300 FSQNDDPRWI HSREDDDDSQ PHEGGDN
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 2e-47 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |