PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01143g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26818.3 Da    PI: 9.5559
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01143g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.6e-30959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  Niben101Scf01143g03005.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59
                              79***********************************************96 PP
2K-box94.51.8e-3175164190
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               y++++ +++++++  s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+++lk+iRs+Kn+l++e+i+elqkk k
  Niben101Scf01143g03005.1  75 YAERQLTAADHETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDSALKHIRSRKNQLMHESISELQKKVK 159
                               566777888888899********************************************************************99 PP

                     K-box  86 elqee 90 
                               e ++e
  Niben101Scf01143g03005.1 160 EREKE 164
                               88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002658.33E-42279No hitNo description
SuperFamilySSF554555.62E-34289IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-2588164IPR002487Transcription factor, K-box
PROSITE profilePS5129715.09788177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERQL TAADHETPGS WTLEHAKLKA RLEVLQRNQR HYAGEDLDSL  120
SMKELQNLEH QLDSALKHIR SRKNQLMHES ISELQKKVKE REKELGQQTQ WKQQTHDHLN  180
SSSFVLTQPL SSLHLGEAYP TAGDNGEVEG SSRQQQQNTV MPPWMLRHLN N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q5e-22174173Myocyte-specific enhancer factor 2B
1tqe_R5e-22174173Myocyte-specific enhancer factor 2B
1tqe_S5e-22174173Myocyte-specific enhancer factor 2B
6c9l_A5e-22174173Myocyte-specific enhancer factor 2B
6c9l_B5e-22174173Myocyte-specific enhancer factor 2B
6c9l_C5e-22174173Myocyte-specific enhancer factor 2B
6c9l_D5e-22174173Myocyte-specific enhancer factor 2B
6c9l_E5e-22174173Myocyte-specific enhancer factor 2B
6c9l_F5e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019238190.11e-165PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-134AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S4C4N31e-163A0A1S4C4N3_TOBAC; agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1U7XR241e-163A0A1U7XR24_NICSY; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009792071.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-100AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]