PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01076g02011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 345aa    MW: 38997.8 Da    PI: 6.4261
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01076g02011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.21.2e-26131191259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                Dgy+WrKYGqK++ gs +pr+YYrCt++   gC ++k+v+rs  + +++e+tY+g+H ++
  Niben101Scf01076g02011.1 131 GDGYSWRKYGQKDILGSIHPRAYYRCTHRntqGCLATKQVQRSVGNSSTFEVTYKGRHSCK 191
                               5***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-26123192IPR003657WRKY domain
PROSITE profilePS5081122.596125193IPR003657WRKY domain
SuperFamilySSF1182909.29E-25129192IPR003657WRKY domain
SMARTSM007748.0E-37130192IPR003657WRKY domain
PfamPF031062.6E-24132191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEKVKDLEKK KLITELTQGR EFVNQLKKQI GPLASPEECD LLLGKILSSL EKSLSILNLK  60
ALFLEGGNAN STSSCSSISF LGNNNSPKSE VLDSTKDQFV GHNWFSKKRK TQQQWSKQVS  120
ICGTGLESPH GDGYSWRKYG QKDILGSIHP RAYYRCTHRN TQGCLATKQV QRSVGNSSTF  180
EVTYKGRHSC KIAQSEIFSL ETQKHQKHNK KQELGYQRQE QEMVIFNSGP NHKVENFSLT  240
KEEVFTPFSL PPSPLNPIEE TQYFSNSMAP FSSPITSELS MYMSLLTDHN EEFAMENILQ  300
SSESDVTELI ISTPTSTSNS PFGGDWDFSV DFEPIVIFDI EEFFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-181321911069OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009798860.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U7YJ600.0A0A1U7YJ60_NICSY; probable WRKY transcription factor 41
STRINGXP_009798860.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-34WRKY family protein