PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01062g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 430aa    MW: 46900.7 Da    PI: 8.9054
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01062g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.19.9e-25143199259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +DgynWrKYGqK+vk  + +rsYYrCt+++C +kk +e+s++ ++v+ei+Y+++Hnh+
  Niben101Scf01062g06001.1 143 RDGYNWRKYGQKQVKIPQGSRSYYRCTHSECYAKK-IECSDHTNRVMEIIYRSQHNHD 199
                               7********************************98.*********************7 PP
2WRKY99.32.3e-31292349259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ + +++++itY+g H+h+
  Niben101Scf01062g06001.1 292 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAVDSTSALIITYKGVHDHD 349
                               7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-21139201IPR003657WRKY domain
SuperFamilySSF1182902.09E-19140201IPR003657WRKY domain
SMARTSM007744.9E-23142200IPR003657WRKY domain
PROSITE profilePS5081118.303144201IPR003657WRKY domain
PfamPF031061.8E-17144199IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-32276351IPR003657WRKY domain
SuperFamilySSF1182901.57E-27285351IPR003657WRKY domain
PROSITE profilePS5081132.363286351IPR003657WRKY domain
SMARTSM007743.4E-36291350IPR003657WRKY domain
PfamPF031061.9E-24293348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDEENESSKA GGAENSNPEE NKNENSSVHD GGVLDGGGDE QVPVEYALPA KEIKDKISVT  60
RPETLSAQVQ TEHQQRMPDE ASSLELSPTS ITPSISSVSS PTVAKRHFSA VVNGRLGSTG  120
EVAKQSSDAK VLPIVPVLKT PSRDGYNWRK YGQKQVKIPQ GSRSYYRCTH SECYAKKIEC  180
SDHTNRVMEI IYRSQHNHDP PPRVNCSKES KPVVLPAPAN DNRMIACPNR SSNETVPSSL  240
KENLQETSPI AEKANQDSCG LKKSDTGSES VSRPGKKPKL VVHAACDVGI SSDGYRWRKY  300
GQKMVKGNPH PRNYYRCTSA GCPVRKHIER AVDSTSALII TYKGVHDHDM PVPKKRQSPP  360
SAPLIAAAAP ASLTNMQAKK PELLQHKKST TQWSVDKEGA LTGEKLDLGG EKAMESARTL  420
LSIGFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-28279351274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624879.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-107WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S4CV830.0A0A1S4CV83_TOBAC; probable WRKY transcription factor 32
TrEMBLA0A1U7XL730.0A0A1U7XL73_NICSY; probable WRKY transcription factor 32
STRINGXP_009624879.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-99WRKY DNA-binding protein 32