PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01025g13019.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 201aa    MW: 23080 Da    PI: 8.6319
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01025g13019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702177.46.3e-55131494154
                    DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 
                                +++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r + l + ++++++++ + ++kr re+          
  Niben101Scf01025g13019.1  13 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFECQTHVKSTWIPVSRRRPRNHLLRTIQQQQQQKQLQVNPKRYREN---------D 88 
                               6789*********************************************99999998888777777777777765.........1 PP

                    DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                +          e ++lP+e+  +avfrcvrvssvd+  +++aYqt+v+i+G vfkGiLydqG+++
  Niben101Scf01025g13019.1  89 NN-----LAAGGEEEDLPTELGLPAVFRCVRVSSVDNVVDQYAYQTSVNIAGRVFKGILYDQGPDT 149
                               12.....222345678************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.1E-5915148IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.0E-271758IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.8E-22100147IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MKMMMMREEG ISSNSRCQDC GNQAKKDCPY LRCRTCCKSR GFECQTHVKS TWIPVSRRRP  60
RNHLLRTIQQ QQQQKQLQVN PKRYRENDNN LAAGGEEEDL PTELGLPAVF RCVRVSSVDN  120
VVDQYAYQTS VNIAGRVFKG ILYDQGPDTE THCNNMARES SSSGFQQEQL TTNLTQPLPS  180
YPSPSNYFMP GTQFFQYPKS F
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019255330.11e-123PREDICTED: protein SHI RELATED SEQUENCE 1-like
SwissprotQ9LQZ52e-53SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A1J6I1121e-122A0A1J6I112_NICAT; Protein shi related sequence 1
STRINGXP_009784124.11e-116(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.12e-54SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]