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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Niben101Scf01025g13019.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family |
SRS |
Protein Properties |
Length: 201aa MW: 23080 Da PI: 8.6319 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Niben101Scf01025g13019.1 | genome | BTI | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 177.4 | 6.3e-55 | 13 | 149 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88
+++CqdCGnqakkdC + RCRtCCksrgf+C+thvkstW+p+++rr r + l + ++++++++ + ++kr re+
Niben101Scf01025g13019.1 13 SNSRCQDCGNQAKKDCPYLRCRTCCKSRGFECQTHVKSTWIPVSRRRPRNHLLRTIQQQQQQKQLQVNPKRYREN---------D 88
6789*********************************************99999998888777777777777765.........1 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ e ++lP+e+ +avfrcvrvssvd+ +++aYqt+v+i+G vfkGiLydqG+++
Niben101Scf01025g13019.1 89 NN-----LAAGGEEEDLPTELGLPAVFRCVRVSSVDNVVDQYAYQTSVNIAGRVFKGILYDQGPDT 149
12.....222345678************************************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 201 aa
Download sequence Send
to blast |
MKMMMMREEG ISSNSRCQDC GNQAKKDCPY LRCRTCCKSR GFECQTHVKS TWIPVSRRRP 60 RNHLLRTIQQ QQQQKQLQVN PKRYRENDNN LAAGGEEEDL PTELGLPAVF RCVRVSSVDN 120 VVDQYAYQTS VNIAGRVFKG ILYDQGPDTE THCNNMARES SSSGFQQEQL TTNLTQPLPS 180 YPSPSNYFMP GTQFFQYPKS F
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |