PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01017g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 288aa    MW: 32337.5 Da    PI: 4.2832
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01017g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.55.9e-382280462
                    zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                              +a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+
  Niben101Scf01017g01002.1 22 HAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80
                              6779***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27873IPR003851Zinc finger, Dof-type
PfamPF027011.9E-322378IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6862478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLAFPSRPMI MMERNRKSNV EHAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK  60
GGSLRNVPVG GGCRKSRRSR STRKDDNTLL TPNPPLSGNE AAGADIDLAD VFAKYLNQGT  120
TNDHDHDHDQ DNILQESPLA DQDYCSIGAS LSNSPSLDSL VNPSSFENES QLDEAIIMGS  180
YQDYPCGFLQ EEQIHEGGSI QEVSGQDFLD FNPSFVEMQA MLGDEIMGQG EEFDYNTSFA  240
WQPTMQFQEL GSILEYDDQL KISTANLASD NNYGSSFDLS SYEIFTRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266430.10.0PREDICTED: dof zinc finger protein DOF3.2-like
SwissprotQ9SVC51e-40DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A314L0R90.0A0A314L0R9_NICAT; Dof zinc finger protein dof3.5
STRINGXP_009628285.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-36Dof family protein