PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf01006g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 487aa    MW: 54342.3 Da    PI: 8.3678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf01006g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.2e-12318364455
                               HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Niben101Scf01006g00001.1 318 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITELQ 364
                               799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-351119IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.475314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.33E-13317368No hitNo description
SuperFamilySSF474593.66E-18317379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17318378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9318364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MRKRVLEKLH MLFGGTDEDN YAFGLDKVTD TEMFFLASMY FSFPHGEGGP GKCFGSGKHV  60
WLSDVMKSSV DYCSRSFLMK SAGMQTIVLI PTDVGVVELG SVRAISESLE LVQSIKSCFS  120
SFLSLVRGKQ AGSVTVVAEK NDVNNSPLSS SFVSEQPPNG IPKIFGQNFN SGCTPLREKL  180
EVRKAEDRPL EMYQNGNRAQ FLNARNGLRA SSWASFSNMK PMNSMDPYRP QIPTNNVRDF  240
VNGTREEFHI NNFQHQKNAS MQIDFTNSRP VISPAHTVES EHSDIEASCK EDRAGPANDK  300
RPRKRGRKPV NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAHI  360
TELQKKLRDM ESERERLGST SRDANASASE IPNSETQNRL PDINVEAAND EVVVRVRCVL  420
ETHPVSRVIE AFKEARVNLV ESKLAAGNDT VYHTFVVESS GSEQLTKEKL MAAFSGEPNA  480
LRPSPVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-28312374264Transcription factor MYC2
5gnj_B2e-28312374264Transcription factor MYC2
5gnj_E2e-28312374264Transcription factor MYC2
5gnj_F2e-28312374264Transcription factor MYC2
5gnj_G2e-28312374264Transcription factor MYC2
5gnj_I2e-28312374264Transcription factor MYC2
5gnj_M2e-28312374264Transcription factor MYC2
5gnj_N2e-28312374264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1299307KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770264.10.0PREDICTED: transcription factor bHLH13-like
RefseqXP_016434433.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1S3X4040.0A0A1S3X404_TOBAC; transcription factor bHLH13-like
TrEMBLA0A1U7W6I50.0A0A1U7W6I5_NICSY; transcription factor bHLH13-like
STRINGXP_009770264.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-134bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]