PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf00998g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 144aa MW: 16316.1 Da PI: 9.0059

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf00998g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW++ LHerF+e+v++LGG++kAtPk+il+lm+ +gLtl+hvkSHLQkYR Niben101Scf00998g02007.1 26 KTRIRWSEHLHERFLECVNRLGGADKATPKQILNLMDSEGLTLDHVKSHLQKYRN 80 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.295	23	83	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-16	24	80	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-28	24	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-25	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	30	79	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MRQQCASPSL TSCNCASSGV SNKHSKTRIR WSEHLHERFL ECVNRLGGAD KATPKQILNL 60 MDSEGLTLDH VKSHLQKYRN AKHIPESTEN SANVTNEDRR TSKKLKRIFD QQQRTNSNLL 120 KRQNSSISSP AQDNAEILDV EDSE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-22	26	83	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	26	83	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	26	83	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	26	83	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-22	25	83	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009788987.1	5e-75	PREDICTED: uncharacterized protein LOC104236700 isoform X2
Refseq	XP_016433947.1	5e-75	PREDICTED: uncharacterized protein LOC107760416 isoform X2
Swissprot	Q0WVU3	2e-29	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A1S3X223	1e-73	A0A1S3X223_TOBAC; uncharacterized protein LOC107760416 isoform X2
TrEMBL	A0A1U7XA68	1e-73	A0A1U7XA68_NICSY; uncharacterized protein LOC104236700 isoform X2
STRING	XP_009788985.1	4e-74	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	2e-32	G2-like family protein