PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00990g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family BBR-BPC
Protein Properties Length: 333aa    MW: 37129.8 Da    PI: 9.2656
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00990g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3773.2e-11513331301
                 GAGA_bind   1 mdddgsre..rnkg....yyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverd 78 
                               mdd+g++e  r+k+    ++ ++ +s+k     q+m+++ erda+i+ernlalsek+aa+aerdma lqrd+a+aern a++erd
  Niben101Scf00990g00008.1   1 MDDSGHHEngRHKPpqgqWFMQHqPSMK-----QIMAIMGERDAAIQERNLALSEKRAALAERDMAILQRDSAIAERNSAIMERD 80 
                               8999998879998743344555556666.....**************************************************** PP

                 GAGA_bind  79 nkllalllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
                               n++++l+++ens++    s +p+g+q+ +++k++++ qq +++ pql++++++ ++++++e+       +++ +++++ k++r+k
  Niben101Scf00990g00008.1  81 NAIATLQYRENSMNsgnmSPCPPGCQIAHEVKHMHHPQQhVHHqPQLGEPTFNHSDMHMNESSL-----PSSPTAPEPTKSRRNK 160
                               ************99999889******************9644469********99999877654.....3333333333444444 PP

                 GAGA_bind 158 kpkekkakkkkkksekskkkvkkesader.............................skaekksidlvlngvslDestlPvPvC 213
                               + ke k     kk++ks kkvkke++d +                             sk ++k ++l+ln+vs+Dest+PvP+C
  Niben101Scf00990g00008.1 161 RSKEAKILTSSKKTSKSSKKVKKEGEDLNktmldeshewngaqemgggsddvnrqlgvSKPDWKGQGLGLNQVSFDESTMPVPIC 245
                               44444444444444555566666666533356677788899******************************************** PP

                 GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfv 298
                               sCtG+lr CYkWGnGGWqS+CCt ++S+yPLP+ +++r+aRi+grKmS++af+klL++LaaeG+dlsnpvDLkd WAkHGtn+++
  Niben101Scf00990g00008.1 246 SCTGVLRPCYKWGNGGWQSSCCTNNLSMYPLPTLPNKRHARIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYI 330
                               ************************************************************************************* PP

                 GAGA_bind 299 tir 301
                               ti+
  Niben101Scf00990g00008.1 331 TIK 333
                               **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.7E-1631333IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1001333IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDSGHHENG RHKPPQGQWF MQHQPSMKQI MAIMGERDAA IQERNLALSE KRAALAERDM  60
AILQRDSAIA ERNSAIMERD NAIATLQYRE NSMNSGNMSP CPPGCQIAHE VKHMHHPQQH  120
VHHQPQLGEP TFNHSDMHMN ESSLPSSPTA PEPTKSRRNK RSKEAKILTS SKKTSKSSKK  180
VKKEGEDLNK TMLDESHEWN GAQEMGGGSD DVNRQLGVSK PDWKGQGLGL NQVSFDESTM  240
PVPICSCTGV LRPCYKWGNG GWQSSCCTNN LSMYPLPTLP NKRHARIGGR KMSGSAFTKL  300
LSRLAAEGHD LSNPVDLKDN WAKHGTNRYI TIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803495.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803496.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803498.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803499.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803500.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803501.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803502.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803503.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803504.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803505.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803506.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
RefseqXP_009803507.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9991e-140BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1U7YND60.0A0A1U7YND6_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009803495.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-134basic pentacysteine 6