PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00985g04006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 349aa    MW: 38250.9 Da    PI: 9.3762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00985g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12281326655
                               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk Lq
  Niben101Scf00985g04006.1 281 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKGLQ 326
                               689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15278339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-11279328No hitNo description
Gene3DG3DSA:4.10.280.101.4E-14280343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9281326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDSEFDKNQN MNSGLLRFRS APSSLLENLT AGVIKIENFG SENKGFNLAG LNNQLVSQNS  60
QLPPQYPRQN TSADVGSMDG GGYRVMGSLG NNHERQNKLA SNLMRQNSSP AGLFSHLNSQ  120
IGYVTLKGGG VGGSRMANVA SGNSSPSSSR LKGHFSSFLS SGAPSSLGML SRISEVDNES  180
SIITVPDDDK RRDGNSEAQF YNMGFPFTSW SDSPQLDNEV KLFANADQIE EVGNRPSILS  240
HHLSLPKTPA EIAAIEKLLH FQDTIPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE  300
LVPNMDKQTN TADMLDLAVE YIKGLQKQYK ALTDHRANCK CSAMQNQSV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769857.10.0PREDICTED: transcription factor bHLH130-like isoform X1
RefseqXP_009769864.10.0PREDICTED: transcription factor bHLH130-like isoform X1
RefseqXP_016504237.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A1S4CSJ10.0A0A1S4CSJ1_TOBAC; transcription factor bHLH130-like isoform X1
TrEMBLA0A1U7W5F70.0A0A1U7W5F7_NICSY; transcription factor bHLH130-like isoform X1
STRINGXP_009769857.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-73bHLH family protein