PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00978g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 734aa    MW: 80506.3 Da    PI: 6.3675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00978g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.2e-171669352
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                              k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ rq+kvWFqNrR
  Niben101Scf00978g00001.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRR 69
                              5679*************************************************9 PP
2START29.81.3e-10143203262
                               HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHH CS
                     START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallv 62 
                               +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ 
  Niben101Scf00978g00001.1 143 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPTRVC 203
                               789***************************************************9998765 PP
3START70.93.6e-23202285125205
                               EEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                     START 125 ivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                               ++++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l++s+++ +++t +a+l+++++
  Niben101Scf00978g00001.1 202 VCERSLGNTQNGPSmppVPNFVRAEMLPSGYLIRPCDGGGSIVHIVDHMDLEAWSVPEVLRPLYESSAVLAQRTSLAALRQLRQ 285
                               899999999999988889**************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007113.9771175IPR001356Homeobox domain
SuperFamilySSF466896.68E-151370IPR009057Homeodomain-like
SMARTSM003893.6E-121379IPR001356Homeobox domain
CDDcd000865.28E-151670No hitNo description
PfamPF000468.6E-151769IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-161969IPR009057Homeodomain-like
SuperFamilySSF559611.33E-18142270No hitNo description
PfamPF018522.3E-20202285IPR002913START domain
Gene3DG3DSA:3.30.530.203.5E-8213281IPR023393START-like domain
PROSITE profilePS5084812.646214282IPR002913START domain
PfamPF086702.2E-49591733IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRK LSAMNKLLME ENDRLQKQVS QLVYENGYFR KQTQTTKIAS KDTSCESVVT  120
SGHPHLSPQH PPRDASPAGL LSIAEETLTE FLSKATGTAV EWVQMPGMKP GPDSIGIIAI  180
SHGCTGMAAR ACGLVGLDPT RVCERSLGNT QNGPSMPPVP NFVRAEMLPS GYLIRPCDGG  240
GSIVHIVDHM DLEAWSVPEV LRPLYESSAV LAQRTSLAAL RQLRQITLEA SQPNVTNWGR  300
RPAALRALSK KLSRGFNEAL NGFSSEGWSM LDNDGMDDVT VLVNSSPDKL MGLNLSFADE  360
FTSLSNAVLC AKASMLLQSV TPAILLRFLR EHRSEWVDND IDAYAAAAVK VGPCSLPGAR  420
LLEVIKLEGV CHSPEDVIMQ RDMFLLQMCS GMDENAVGTC AELIFAPIDA SFADDAPLLP  480
SGFRIIPLDS AKEASSPNRT LDLTSALEIG PAESKVANDL KSTGVASKSI MTIAFQFAFE  540
SHMKENVASM ARKYVRSFIS SVQRVALAIS PSHFGSLGGL RLPLGTPEAH TLARWICQSY  600
RHYLGVELPK LSGEGSESVL ESLWQHSDAI ICCSAKGLPV FTFANQAGLD MLETTLVGLQ  660
DISLEKIFDE HGRKNLCSEF PQIMQQGFAC LRGGICLSSM GRPVSYEKAV AWKVLNEEDN  720
AHCMSFMFVN WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061298.10.0homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A067ED210.0A0A067ED21_CITSI; Uncharacterized protein
STRINGPGSC0003DMT4000067350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]