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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Niben101Scf00966g02001.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
NAC |
| Protein Properties |
Length: 390aa MW: 44351.1 Da PI: 7.5213 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf00966g02001.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 169 | 1.5e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85
+ pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wka
Niben101Scf00966g02001.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKA 97
579***************************.89***************8778899****************************** PP
NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
tg+d++++s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
Niben101Scf00966g02001.1 98 TGTDRPIYSSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
*********956677***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MEGRNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60
KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120
FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNAHRA 180
LSHSWVSPTV PENTTSDFLI SSHFINYSNE ISLINKTSSP IQFSGSTIND LQNSSSNMAS 240
FSTLDLPLYK TLNSNYDPIT SYTFSSCTET SDILPLPKCI NLNNNNIDAS SLLLNMSSSL 300
FGDYSIPLPE NIEGGGVLDQ ETTLKETNHV NNMDHMEEQW RNVRSIGLLP LNNFPLNLAA 360
DAWKTNLLWD SSPCPSSEMS TSYSTNKCYT
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-54 | 3 | 175 | 5 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-54 | 3 | 175 | 5 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-54 | 3 | 175 | 5 | 168 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-54 | 3 | 175 | 5 | 168 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swm_B | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swm_C | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swm_D | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swp_A | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swp_B | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swp_C | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 3swp_D | 3e-54 | 3 | 175 | 8 | 171 | NAC domain-containing protein 19 |
| 4dul_A | 2e-54 | 3 | 175 | 5 | 168 | NAC domain-containing protein 19 |
| 4dul_B | 2e-54 | 3 | 175 | 5 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
